Evidence map›Paper›PMID 31172343›Full record

ArticlePlanta2019

Integrated analysis of miRNAs and their targets reveals that miR319c/TCP2 regulates apical bud burst in tea plant (Camellia sinensis).

Shengrui Liu, Xiaozeng Mi, Ran Zhang, Yanlin An, Qiying Zhou, Tianyuan Yang, Xiaobo Xia, Rui Guo, Xuewen Wang, Chaoling Wei

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Shengrui LiuState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China.
Xiaozeng MiState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China.
Ran ZhangTea Research Institution, Anhui Academy of Agricultural Sciences, Huangshang, China.
Yanlin AnState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China.
Qiying ZhouHenan Key Laboratory of Tea Plant Biology, Xinyang Normal University, 237 Nanhu Road, Xinyang, 464000, China.
Tianyuan YangState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China.
Xiaobo XiaState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China.
Rui GuoState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China.
Xuewen WangDepartment of Genetics, University of Georgia, Athens, GA, 30602, USA.
Chaoling WeiState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China. weichl@ahau.edu.cn.ORCID http://orcid.org/0000-0003-0274-0910
Anhui Agricultural University · CNAnhui Academy of Agricultural Sciences · CNUniversity of Georgia · USXinyang Normal University · CN

Funding

National Natural Science Foundation of China 31800585)Natural Science Foundation of Anhui Province 1808085QC92Postdoctoral Research Foundation of China 2017M621991University Natural Science Research Project of Anhui Province KJ2018A0131
6 · The paper itself

Abstract

MAIN

conclusionThe roles of microRNA-mediated epigenetic regulation were highlighted in the bud dormancy-activity cycle, implying that certain differentially expressed miRNAs play crucial roles in apical bud burst, such as csn-miR319c/TCP2. microRNAs (miRNAs) are a class of small non-coding RNAs that regulate gene expression by targeting mRNA transcripts for cleavage or directing translational inhibition. To investigate whether miRNAs regulate bud dormancy-activation transition in tea plant, which largely affects the yield and price of tea products and adaptability of tea trees, we constructed small RNA libraries from three different periods of bud dormancy-burst transition. Through sequencing analysis, 262 conserved and 83 novel miRNAs were identified, including 118 differentially expressed miRNAs. Quantitative RT-PCR results for randomly selected miRNAs exhibited that our comprehensive analysis is highly reliable and accurate. The content of caffeine increased continuously from the endodormancy bud to flushing bud, and differentially expressed miRNAs coupling with their targets associated with bud burst were identified. Remarkably, csn-miR319c was downregulated significantly from the quiescent bud to burst bud, while its target gene CsnTCP2 (TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 2) displayed opposite expression patterns. Co-transformation experiment in tobacco demonstrated that csn-miR319c can significantly suppress the functions of CsnTCP2. This study on miRNAs and the recognition of target genes could provide new insights into the molecular mechanism of the bud dormancy-activation transition in tea plant.

Indexed as

Amino Acid SequenceCamellia sinensisDown-RegulationEpigenesis, GeneticGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGene LibraryMicroRNAsNicotianaPhylogenyPlant LeavesPlant ProteinsRNA, MessengerRNA, PlantSequence AlignmentMicroRNAsPlant ProteinsRNA, MessengerRNA, PlantBud burstBud dormancyCaffeine biosynthesismiRNAsPhytohormonesTea plant

Identifiers

PMID31172343
OpenAlexW2949083924

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.