Evidence map›Paper›PMID 31172227›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019

Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium).

Steve Larson, Lee DeHaan, Jesse Poland, Xiaofei Zhang, Kevin Dorn, Traci Kantarski, James Anderson, Jeremy Schmutz, Jane Grimwood, Jerry Jenkins and 4 more

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Genome Analysis ofPlants (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Genetic architecture and QTL selection response for Kernza perennial grain domestication traits.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Steve LarsonUnited States Department of Agriculture, Agriculture Research Service, Forage and Range Research, Utah State University, Logan, UT, 84322, USA. Steve.Larson@usda.gov.ORCID http://orcid.org/0000-0003-2742-2134
Lee DeHaanThe Land Institute, 2440 E. Water Well Rd, Salina, KS, 67401, USA.ORCID http://orcid.org/0000-0002-6368-5241
Jesse PolandDepartment of Plant Pathology, Kansas State University, 4024 Throckmorton, Manhattan, KS, 66506, USA.ORCID http://orcid.org/0000-0002-7856-1399
Xiaofei ZhangDepartment of Horticultural Science, North Carolina State University, 212 Kilgore Hall, 2721 Founders Drive, PO Box 7609, Raleigh, NC, 27607, USA.ORCID http://orcid.org/0000-0003-4516-9179
Kevin DornDepartment of Plant Pathology, Kansas State University, 4024 Throckmorton, Manhattan, KS, 66506, USA.ORCID http://orcid.org/0000-0003-2722-6221
Traci KantarskiAmerican Association for the Advancement of Science, Science and Technology Policy Fellow at the United States Department of Agriculture, Animal and Plant Health Inspection Service, 4700 River Road, Riverdale, MD, 20737, USA.ORCID http://orcid.org/0000-0002-8584-2965
James AndersonDepartment of Agronomy and Plant Genetics, University of Minnesota, 1991 Buford Circle, St. Paul, MN, 55108, USA.ORCID http://orcid.org/0000-0003-4655-6517
Jeremy SchmutzDepartment of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0001-8062-9172
Jane GrimwoodHudson Alpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL, 35806, USA.ORCID http://orcid.org/0000-0002-8356-8325
Jerry JenkinsHudson Alpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL, 35806, USA.ORCID http://orcid.org/0000-0002-7943-3997
Shengqiang ShuDepartment of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-4336-8994
Jared CrainDepartment of Plant Pathology, Kansas State University, 4024 Throckmorton, Manhattan, KS, 66506, USA.ORCID http://orcid.org/0000-0001-9484-8325
Matthew RobbinsUnited States Department of Agriculture, Agriculture Research Service, Forage and Range Research, Utah State University, Logan, UT, 84322, USA.ORCID http://orcid.org/0000-0002-5467-4452
Kevin JensenUnited States Department of Agriculture, Agriculture Research Service, Forage and Range Research, Utah State University, Logan, UT, 84322, USA.ORCID http://orcid.org/0000-0001-5560-0394

Funding

Office of Science of the US Department of Energy DE-AC02-05CH11231USDA-NIFA 2017-67012-26129 project accession no. 1011622
6 · The paper itself

Abstract

Allohexaploid (2n = 6x = 42) intermediate wheatgrass (Thinopyrum intermedium), abbreviated IWG, is an outcrossing perennial grass belonging to the tertiary gene pool of wheat. Perenniality would be valuable option for grain production, but attempts to introgress this complex trait from wheat-Thinopyrum hybrids have not been commercially successful. Efforts to breed IWG itself as a dual-purpose forage and grain crop have demonstrated useful progress and applications, but grain yields are significantly less than wheat. Therefore, genetic and physical maps have been developed to accelerate domestication of IWG. Herein, these maps were used to identify quantitative trait loci (QTLs) and candidate genes associated with IWG grain production traits in a family of 266 full-sib progenies derived from two heterozygous parents, M26 and M35. Transgressive segregation was observed for 17 traits related to seed size, shattering, threshing, inflorescence capacity, fertility, stem size, and flowering time. A total of 111 QTLs were detected in 36 different regions using 3826 genotype-by-sequence markers in 21 linkage groups. The most prominent QTL had a LOD score of 15 with synergistic effects of 29% and 22% over the family means for seed retention and percentage of naked seeds, respectively. Many QTLs aligned with one or more IWG gene models corresponding to 42 possible domestication orthogenes including the wheat Q and RHT genes. A cluster of seed-size and fertility QTLs showed possible alignment to a putative Z self-incompatibility gene, which could have detrimental grain-yield effects when genetic variability is low. These findings elucidate pathways and possible hurdles in the domestication of IWG.

Indexed as

Chromosome MappingDomesticationQuantitative Trait, HeritableAgropyronBase SequenceChromosomes, PlantGenetic LinkageGenetic MarkersGenome, PlantGenotypeLod ScorePhenotypeQuantitative Trait LociGenetic Markers

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.