Evidence map›Paper›PMID 31172134›Full record

ArticleMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention2018

Exploratory Population Analysis with Unbalanced Optimal Transport.

Samuel Gerber, Marc Niethammer, Martin Styner, Stephen Aylward

Abstract read
In one paragraph

Article in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Accurate Point Cloud Registration with Robust Optimal Transport.Advances in neural information processing systems · 2021
    Article
  3. Article
  4. Fisher-Rao Regularized Transport Analysis of the Glymphatic System and Waste Drainage.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Samuel GerberKitware Inc., Carborro, NC 27510, USA.
Marc NiethammerUniversity of North Carolina, Chapel Hill, NC 27504, USA.
Martin StynerUniversity of North Carolina, Chapel Hill, NC 27504, USA.
Stephen AylwardKitware Inc., Carborro, NC 27510, USA.

Funding

Cellular and molecular mechanisms governing cortical surface area overgrowth in iPSC-derived neural cells from longitudinally characterized individuals with autismR01HD055741 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Joseph Piven · 2007 to 2026
$52.6M
Preclinical CoreU54HD079124 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MOY, SHERYL S · 2013 to 2019
$8.0M
Shape Analysis Toolbox: From medical images to quantitative insights of anatomyR01EB021391 · NIBIB · KITWARE, INC. · PI PANIAGUA, BEATRIZ · 2016 to 2024
$3.5M
Slicer+PLUS: Collaborative, open-source software for ultrasound analysisR01EB021396 · NIBIB · KITWARE, INC. · PI AYLWARD, STEPHEN R, FICHTINGER, GABOR · 2016 to 2019
$2.5M
Multimodality Image-Based Assessment System for Traumatic Brain InjuryR44NS081792 · NINDS · KITWARE, INC. · PI AYLWARD, STEPHEN R, NIETHAMMER, MARC · 2015 to 2016
$1.3M
Quantitative Ultrasound Analysis of Vascular Morphology for Cancer AssessmentR44CA165621 · NCI · KITWARE, INC. · PI AYLWARD, STEPHEN R, DAYTON, PAUL A · 2015 to 2016
$1.3M
Automated Assessment of Leptomeningeal Collaterals on CT AngiogramsR42NS086295 · NINDS · KITWARE, INC. · PI AYLWARD, STEPHEN R, LEE, YUEH Z · 2018 to 2019
$977k
Enhanced Software Tools for Detecting Anatomical Differences in Image Data SetsR41MH118845 · NIMH · KITWARE, INC. · PI GERBER, SAMUEL, NIETHAMMER, MARC · 2018 to 2020
$695k
NCI NIH HHS R44 CA165621NIBIB NIH HHS R01 EB021391NIBIB NIH HHS R01 EB021396NICHD NIH HHS R01 HD055741NICHD NIH HHS U54 HD079124NIMH NIH HHS R41 MH118845NINDS NIH HHS R42 NS086295NINDS NIH HHS R44 NS081792
6 · The paper itself

Abstract

The plethora of data from neuroimaging studies provide a rich opportunity to discover effects and generate hypotheses through exploratory data analysis. Brain pathologies often manifest in changes in shape along with deterioration and alteration of brain matter, i.e., changes in mass. We propose a morphometry approach using unbalanced optimal transport that detects and localizes changes in mass and separates them from changes due to the location of mass. The approach generates images of mass allocation and mass transport cost for each subject in the population. Voxelwise correlations with clinical variables highlight regions of mass allocation or mass transfer related to the variables. We demonstrate the method on the white and gray matter segmentations from the OASIS brain MRI data set. The separation of white and gray matter ensures that optimal transport does not transfer mass between different tissues types and separates gray and white matter related changes. The OASIS data set includes subjects ranging from healthy to mild and moderate dementia, and the results corroborate known pathology changes related to dementia that are not discovered with traditional voxel-based morphometry. The transport-based morphometry increases the explanatory power of regression on clinical variables compared to traditional voxel-based morphometry, indicating that transport cost and mass allocation images capture a larger portion of pathology induced changes.

Indexed as

AlgorithmsBrain MappingImage Processing, Computer-AssistedBrainHumansMagnetic Resonance ImagingNeuroimagingReproducibility of ResultsSensitivity and Specificity

Identifiers

PMID31172134
PMCPMC6547365

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.