ArticleThe ISME journal2019
Anaerobic hydrocarbon degradation in candidate phylum 'Atribacteria' (JS1) inferred from genomics.
Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed.
- Isolation of genome-predicted Caldatribacterium (Atribacterota) reveals pervasive microbial cultivation problem due to folate precipitation.Nature communications · 2026Article
- Exploring microbial diversity using cell-size fractionated enrichment incubations from subsurface aquifers at Äspö, Sweden.Communications biology · 2026Article
- Widespread deep-sea microorganisms in subseafloor geochemical cycling.Frontiers in microbiology · 2026Article
- Microbial Community Composition and Function in Jiangsu Oil Reservoir Cores, China.Environmental microbiology reports · 2025Article
- Study of Stratification of Prokaryotic Microbial Communities in Sediments of Velikaya Salma Strait and Kandalaksha Bay, the White Sea.Current microbiology · 2025Article
- Article
- Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments.Microbiome · 2024Article
- Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere.mSphere · 2024Article
- Anaerobic hydrocarbon biodegradation by alkylotrophic methanogens in deep oil reservoirs.The ISME journal · 2024Article
- Ecological indicators and biological resources for hydrocarbon rhizoremediation in a protected area.Frontiers in bioengineering and biotechnology · 2024Article
- Anaerobic degradation of organic carbon supports uncultured microbial populations in estuarine sediments.Microbiome · 2023Article
- Tracing the Century-Long Evolution of Microplastics Deposition in a Cold Seep.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023Article
- Thermal Selection of Microbial Communities and Preservation of Microbial Function in Guaymas Basin Hydrothermal Sediments.Applied and environmental microbiology · 2023Article
- The majority of microorganisms in gas hydrate-bearing subseafloor sediments ferment macromolecules.Microbiome · 2023Article
- Riddles of Lost City: Chemotrophic Prokaryotes Drives Carbon, Sulfur, and Nitrogen Cycling at an Extinct Cold Seep, South China Sea.Microbiology spectrum · 2023Article
- Environmental heterogeneity shapes the C and S cycling-associated microbial community in Haima's cold seeps.Frontiers in microbiology · 2023Article
- Utilization of-Omic technologies in cold climate hydrocarbon bioremediation: a text-mining approach.Frontiers in microbiology · 2023Review
- Anaerobic oxidation of propane coupled to nitrate reduction by a lineage within the class Symbiobacteriia.Nature communications · 2022Article
- Genome-resolved analyses show an extensive diversification in key aerobic hydrocarbon-degrading enzymes across bacteria and archaea.BMC genomics · 2022Article
- Physiological and Genomic Characterization ofMicroorganisms · 2022Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The hydrocarbon-enriched environments, such as oil reservoirs and oil sands tailings ponds, contain a broad diversity of uncultured microorganisms. Despite being one of the few prokaryotic lineages that is consistently detected in both production water from oil reservoirs and stable hydrocarbon-degrading enrichment cultures originated from oil reservoirs, the physiological and ecological roles of candidate phylum "Atribacteria" (OP9/JS1) are not known in deep subsurface environments. Here, we report the expanded metabolic capabilities of Atribacteria as inferred from genomic reconstructions. Seventeen newly assembled medium-to-high-quality metagenomic assembly genomes (MAGs) were obtained either from co-assembly of two metagenomes from an Alaska North Slope oil reservoir or from previous studies of metagenomes coming from different environments. These MAGs comprise three currently known genus-level lineages and four novel genus-level groups of OP9 and JS1, which expands the genomic coverage of the major lineages within the candidate phylum Atribacteria. Genes involved in anaerobic hydrocarbon degradation were found in seven MAGs associated with hydrocarbon-enriched environments, and suggest that some Atribacteria could ferment short-chain n-alkanes into fatty acid while conserving energy. This study expands predicted metabolic capabilities of Atribacteria (JS1) and suggests that they are mediating a key role in subsurface carbon cycling.
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