Evidence map›Paper›PMID 31171819›Full record

ArticleScientific reports2019

Comparative genomics provides new insights into the remarkable adaptations of the African wild dog (Lycaon pictus).

Daniel E Chavez, Ilan Gronau, Taylor Hains, Sergei Kliver, Klaus-Peter Koepfli, Robert K Wayne

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 38 citations in OpenAlex.

  1. Feeding biomechanics in vertebrates and beyond.Anatomical record (Hoboken, N.J. : 2007) · 2026
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  8. Comparative genomics uncovers the evolutionary history, demography, and molecular adaptations of South American canids.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Daniel E ChavezDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, California, 90095, USA. dechavezv@ucla.edu.
Ilan GronauEfi Arazi School of Computer Science, Herzliya Interdisciplinary Center (IDC), Herzliya, 46150, Israel.
Taylor HainsEnvironmental Science and Policy, Johns Hopkins University, Washington, D.C., 20036, USA.
Sergei KliverInstitute of Molecular and Cellular Biology, Novosibirsk, 630090, Russian Federation.
Klaus-Peter KoepfliSmithsonian Conservation Biology Institute, National Zoological Park, Washington, D.C., 20008, USA.
Robert K WayneDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, California, 90095, USA.
University of California, Los Angeles · USInstitute of Molecular and Cell Biology · RUJohns Hopkins University · USReichman University · ILSt Petersburg University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within the Canidae, the African wild dog (Lycaon pictus) is the most specialized with regards to cursorial adaptations (specialized for running), having only four digits on their forefeet. In addition, this species is one of the few canids considered to be an obligate meat-eater, possessing a robust dentition for taking down large prey, and displays one of the most variable coat colorations amongst mammals. Here, we used comparative genomic analysis to investigate the evolutionary history and genetic basis for adaptations associated with cursoriality, hypercanivory, and coat color variation in African wild dogs. Genome-wide scans revealed unique amino acid deletions that suggest a mode of evolutionary digit loss through expanded apoptosis in the developing first digit. African wild dog-specific signals of positive selection also uncovered a putative mechanism of molar cusp modification through changes in genes associated with the sonic hedgehog (SHH) signaling pathway, required for spatial patterning of teeth, and three genes associated with pigmentation. Divergence time analyses suggest the suite of genomic changes we identified evolved ~1.7 Mya, coinciding with the diversification of large-bodied ungulates. Our results show that comparative genomics is a powerful tool for identifying the genetic basis of evolutionary changes in Canidae.

Indexed as

Adaptation, PhysiologicalBiological EvolutionGenomicsAnimalsAnimals, WildBody PatterningCanidaeComputational BiologyDietDNAFemaleGenotypeHedgehog ProteinsMolarMonte Carlo MethodPigmentationDNAHedgehog Proteins

Identifiers

PMID31171819
PMCPMC6554312
OpenAlexW2948926408

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.