Evidence map›Paper›PMID 31171626›Full record

ArticleGut2020

Multiplex profiling of peritoneal metastases from gastric adenocarcinoma identified novel targets and molecular subtypes that predict treatment response.

Ruiping Wang, Shumei Song, Kazuto Harada, Fatemeh Ghazanfari Amlashi, Brian Badgwell, Melissa Pool Pizzi, Yan Xu, Wei Zhao, Xiaochuan Dong, Jiangkang Jin and 29 more

Open access · hybridAbstract read
In one paragraph

Article in Gut, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed, 3 pooled it
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 3 syntheses or guidelines pooled it, 170 citations in OpenAlex.

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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 6 institutions in 5 countries.

Ruiping Wang *Genomic Medicine, UT MDACC, Houston, Texas, USA.
Shumei Song *GI Medical Oncology, UT MDACC, Houston, Texas, USA.ORCID 0000-0002-8128-6287
Kazuto Harada *GI Medical Oncology, UT MDACC, Houston, Texas, USA.
Fatemeh Ghazanfari AmlashiGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Brian BadgwellSurgical Oncology, UT MDACC, Houston, Texas, USA.
Melissa Pool PizziGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Yan XuGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Wei ZhaoGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Xiaochuan DongGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Jiangkang JinGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Ying WangGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Ailing ScottGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Lang MaGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Longfei HuoGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Diego VicenteSurgical Oncology, UT MDACC, Houston, Texas, USA.
Mariela Blum MurphyGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Namita ShanbhagGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Ghia TatlonghariGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Irene ThomasGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Jane RogersPharmacy Clinical Programs, UT MDACC, Houston, TX, USA.
Makoto KobayashiClinical Cancer Prevention, UT MDACC, Houston, Texas, USA.
Jody VykoukalClinical Cancer Prevention, UT MDACC, Houston, Texas, USA.
Jeannelyn Santiano EstrellaPathology, UT MDACC, Houston, Texas, USA.
Sinchita Roy-ChowdhuriPathology, UT MDACC, Houston, Texas, USA.
Guangchun HanGenomic Medicine, UT MDACC, Houston, Texas, USA.
Shaojun ZhangGenomic Medicine, UT MDACC, Houston, Texas, USA.
Xizeng MaoGenomic Medicine, UT MDACC, Houston, Texas, USA.
Xingzhi SongGenomic Medicine, UT MDACC, Houston, Texas, USA.
Jianhua ZhangGenomic Medicine, UT MDACC, Houston, Texas, USA.
Jian GuEpidemiology, UT MDACC, Houston, Texas, USA.
Randy L JohnsonCancer Biology, UT MDACC, Houston, Texas, USA.
George Adrian CalinExperimental Therapeutics, UT MDACC, Houston, Texas, USA.
Guang PengClinical Cancer Prevention, UT MDACC, Houston, Texas, USA.
Ju-Seog LeeSystems Biology, UT MDACC, Houston, Texas, USA.
Samir M HanashClinical Cancer Prevention, UT MDACC, Houston, Texas, USA.
Andrew FutrealGenomic Medicine, UT MDACC, Houston, Texas, USA.
Zhenning WangSurgical Oncology and General Surgery, First Hospital of China Medical University, Shenyang, China.
Linghua WangGenomic Medicine, UT MDACC, Houston, Texas, USA.ORCID 0000-0001-9380-0266
Jaffer A AjaniGI Medical Oncology, UT MDACC, Houston, Texas, USA.
Genomic (Brazil) · BRSociety of Surgical Oncology · USAmerican Gastroenterological Association · USAnesthesiology and Surgical Oncology Research Group · USCenter for Systems Biology · USCentre for Cancer Biology · AU

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
The Role of Telomere Shortening in MDS-AML Pathogenesis (resubmission)R01CA160433 · NCI · JOHNS HOPKINS UNIVERSITY · PI ARMANIOS, MARY Y · 2012 to 2016
$1.7M
Prediction of Pathologic Complete Response by Gene Expression Profiling in EsophaR01CA138671 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AJANI, JAFFER A. · 2010 to 2014
$1.5M
Inhibition of Hedgehog Signaling in Gli-1+Adeno CA of the Esoph or GE junctionR01CA172741 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AJANI, JAFFER A. · 2013 to 2017
$1.4M
Molecular Biomarkers as Classifiers to Individualize Therapy of Esophagus CancerR21CA129906 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AJANI, JAFFER A. · 2009 to 2010
$367k
Molecular Markers of Response to Chemoradiation in Localized Esophageal CancerR21CA127672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AJANI, JAFFER A. · 2008 to 2009
$312k
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA138671NCI NIH HHS R01 CA160433NCI NIH HHS R01 CA172741NCI NIH HHS R21 CA127672NCI NIH HHS R21 CA129906
6 · The paper itself

Abstract

objectivePeritoneal carcinomatosis (PC) occurs frequently in patients with gastric adenocarcinoma (GAC) and confers a poor prognosis. Multiplex profiling of primary GACs has been insightful but the underpinnings of PC's development/progression remain largely unknown. We characterised exome/transcriptome/immune landscapes of PC cells from patients with GAC aiming to identify novel therapeutic targets.

designWe performed whole-exome sequencing (WES) and whole transcriptome sequencing (RNA-seq) on 44 PC specimens (43 patients with PC) including an integrative analysis of WES, RNA-seq, immune profile, clinical and pathological phenotypes to dissect the molecular pathogenesis, identifying actionable targets and/or biomarkers and comparison with TCGA primary GACs.

resultsWe identified distinct alterations in PC versus primary GACs, such as more frequent

conclusionsWe have uncovered the unique mutational landscape, copy number alteration and gene expression profile of PC cells and defined PC molecular subtypes, which correlated with PC therapy resistance/response. Novel targets and immune checkpoint proteins have been identified with a potential to be translated into clinics.

Indexed as

AdenocarcinomaAdultAgedAged, 80 and overAntineoplastic AgentsChromosomal InstabilityDNA Copy Number VariationsDNA, NeoplasmExome SequencingFemaleGene Expression ProfilingHumansMaleMiddle AgedMolecular Targeted TherapyMutationAntineoplastic AgentsDNA, Neoplasmcancer geneticsgastric cancergastrointestinal cancergene expressionmutations

Identifiers

PMID31171626
PMCPMC6943252
OpenAlexW2954549198

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.