Evidence map›Paper›PMID 31167910›Full record

ArticleJournal of virology2019

Hepatitis B Virus X Protein Function Requires Zinc Binding.

Dhivya Ramakrishnan, Weimei Xing, Rudolf K Beran, Saketh Chemuru, Henry Rohrs, Anita Niedziela-Majka, Bruno Marchand, Upasana Mehra, Aleš Zábranský, Michal Doležal and 5 more

Abstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Structural basis of the hepatitis B virus X protein in complex with DDB1.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. The Fe and Zn cofactor dilemma.Biochimica et biophysica acta. Proteins and proteomics · 2023
    Review
  16. Article
  17. Relevance of HBx for Hepatitis B Virus-Associated Pathogenesis.International journal of molecular sciences · 2023
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Dhivya Ramakrishnan *Gilead Sciences, Inc., Foster City, California, USA.
Weimei Xing *Gilead Sciences, Inc., Foster City, California, USA.
Rudolf K BeranGilead Sciences, Inc., Foster City, California, USA.
Saketh ChemuruDepartment of Chemistry, Washington University, St. Louis, Missouri, USA.
Henry RohrsDepartment of Chemistry, Washington University, St. Louis, Missouri, USA.
Anita Niedziela-MajkaGilead Sciences, Inc., Foster City, California, USA.
Bruno MarchandGilead Sciences, Inc., Foster City, California, USA.
Upasana MehraGilead Sciences, Inc., Foster City, California, USA.
Aleš ZábranskýInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
Michal DoležalInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
Martin HubálekInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
Iva PichováInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
Michael L GrossDepartment of Chemistry, Washington University, St. Louis, Missouri, USA.
Hyock Joo Kwon *Gilead Sciences, Inc., Foster City, California, USA hyockjoo.kwon@gilead.com simon.fletcher@gilead.com.
Simon P Fletcher *Gilead Sciences, Inc., Foster City, California, USA hyockjoo.kwon@gilead.com simon.fletcher@gilead.com.

Funding

TrainingP41GM103422 · NIGMS · WASHINGTON UNIVERSITY · PI YARASHESKI, KEVIN E · 2012 to 2019
$12.0M
NIGMS NIH HHS P41 GM103422
6 · The paper itself

Abstract

The host structural maintenance of chromosomes 5/6 complex (Smc5/6) suppresses hepatitis B virus (HBV) transcription. HBV counters this restriction by expressing the X protein (HBx), which redirects the cellular DNA damage-binding protein 1 (DDB1)-containing E3 ubiquitin ligase to target Smc5/6 for degradation. However, the details of how HBx modulates the interaction between DDB1 and Smc5/6 remain to be determined. In this study, we performed biophysical analyses of recombinant HBx and functional analysis of HBx mutants in HBV-infected primary human hepatocytes (PHH) to identify key regions and residues that are required for HBx function. We determined that recombinant HBx is soluble and exhibits stoichiometric zinc binding when expressed in the presence of DDB1. Mass spectrometry-based hydrogen-deuterium exchange and cysteine-specific chemical footprinting of the HBx:DDB1 complex identified several HBx cysteine residues (located between amino acids 61 and 137) that are likely involved in zinc binding. These cysteine residues did not form disulfide bonds in HBx expressed in human cells. In line with the biophysical data, functional analysis demonstrated that HBx amino acids 45 to 140 are required for Smc6 degradation and HBV transcription in PHH. Furthermore, site-directed mutagenesis determined that C61, C69, C137, and H139 are necessary for HBx function, although they are likely not essential for DDB1 binding. This CCCH motif is highly conserved in HBV as well as in the X proteins from various mammalian hepadnaviruses. Collectively, our data indicate that the essential HBx cysteine and histidine residues form a zinc-binding motif that is required for HBx function.

Indexed as

Amino Acid MotifsAmino AcidsAmino Acid SequenceBinding SitesDNA-Binding ProteinsHepatitis BHepatitis B virusHost-Pathogen InteractionsHumansProtein BindingRecombinant Fusion ProteinsTrans-ActivatorsViral Regulatory and Accessory ProteinsZincAmino AcidsDDB1 protein, humanDNA-Binding Proteinshepatitis B virus X proteinRecombinant Fusion ProteinsTrans-ActivatorsViral Regulatory and Accessory ProteinsZincDDB1HBxhepatitis B virusSmc5/6 complex

Identifiers

PMID31167910
PMCPMC6675892

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.