Evidence map›Paper›PMID 31167832›Full record

ArticleG3 (Bethesda, Md.)2019

A Powerful Method To Test Associations Between Ordinal Traits and Genotypes.

Jinjuan Wang, Juan Ding, Shouyou Huang, Qizhai Li, Dongdong Pan

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jinjuan WangLSC, NCMIS, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, 100190, China.
Juan DingSchool of Mathematics and Statistics, Guangxi Normal University, Guilin, 541004, China.
Shouyou HuangSchool of Mathematics and Statistics, Hubei Normal University, Huangshi, 435002, China.
Qizhai LiLSC, NCMIS, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, 100190, China, liqz@amss.ac.cn ddpan@ynu.edu.cn.
Dongdong PanYunnan Key Laboratory of Statistical Modeling and Data Analysis, Yunnan University, Kunming, 650500, China, and liqz@amss.ac.cn ddpan@ynu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The methods commonly used to test the associations between ordinal phenotypes and genotypes often treat either the ordinal phenotype or the genotype as continuous variables. To address limitations of these approaches, we propose a model where both the ordinal phenotype and the genotype are viewed as manifestations of an underlying multivariate normal random variable. The proposed method allows modeling the ordinal phenotype, the genotype and covariates jointly. We employ the generalized estimating equation technique and M-estimation theory to estimate the model parameters and deduce the corresponding asymptotic distribution. Numerical simulations and real data applications are also conducted to compare the performance of the proposed method with those of methods based on the logit and probit models. Even though there may be potential limitations in Type I error rate control for our method, the gains in power can prove its practical value in case of exactly ordinal phenotypes.

Indexed as

Genetic Association StudiesGenotypeModels, GeneticPhenotypeAlgorithmsAutoantibodiesDisease SusceptibilityHumansPolymorphism, Single NucleotideQuantitative Trait, HeritableQuantitative Trait LociAutoantibodiesassociation studygeneralized estimating equationlatent normal variateM-estimationordinal phenotype

Identifiers

PMID31167832
PMCPMC6686925

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.