Evidence map›Paper›PMID 31165873›Full record

ArticleNucleic acids research2019

A Mn-sensing riboswitch activates expression of a Mn2+/Ca2+ ATPase transporter in Streptococcus.

Julia E Martin, My T Le, Nabin Bhattarai, Daiana A Capdevila, Jiangchuan Shen, Malcolm E Winkler, David P Giedroc

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. The current riboswitch landscape inMicrobiology (Reading, England) · 2024
    Review
  7. Calcium RescuesMicroorganisms · 2024
    Article
  8. Biomolecules · 2024
    Article
  9. The five homologous CiaR-controlled Ccn sRNAs ofbioRxiv : the preprint server for biology · 2024
    Article
  10. Functional characterization of a TerC family protein ofApplied and environmental microbiology · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. TerC Proteins Function During Protein Secretion to Metalate Exoenzymes.bioRxiv : the preprint server for biology · 2023
    Article
  15. Article
  16. The oxidative stress response ofFrontiers in microbiology · 2023
    Review
  17. Why is manganese so valuable to bacterial pathogens?Frontiers in cellular and infection microbiology · 2023
    Review
  18. Review
  19. An Intrinsic Alkalization Circuit Turns onMicrobiology spectrum · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Julia E MartinDepartment of Biological Sciences, Idaho State University, Pocatello, ID 83209, USA.
My T LeDepartment of Cell Biology, Faculty of Biological Sciences, Vietnam National University, Hanoi, Vietnam.
Nabin BhattaraiDepartment of Biological Sciences, Idaho State University, Pocatello, ID 83209, USA.
Daiana A CapdevilaDepartment of Chemistry, Indiana University, Bloomington, IN 47405, USA.
Jiangchuan ShenDepartment of Cellular and Molecular Biochemistry, Indiana University, Bloomington, IN 47405, USA.
Malcolm E WinklerDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
David P GiedrocDepartment of Chemistry, Indiana University, Bloomington, IN 47405, USA.
Indiana University Bloomington · USIdaho State University · USVietnam National University, Hanoi · VN

Funding

Transition Metal Homeostasis and Reactive Sulfur Species in Bacterial PathogensR35GM118157 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI DAVID P. GIEDROC · 2016 to 2026
$5.9M
New Regulatory Interactions and Circuits that Mediate the Dynamics, Homeostasis, and Stress Responses of Peptidoglycan Synthesis in the Superbug Streptococcus pneumoniaeR35GM131767 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI MALCOLM E. WINKLER · 2019 to 2026
$4.8M
New Regulatory Circuits that Mediate Peptidoglycan Homeostasis and Cell Wall Stress Responses in the Superbug Streptococcus pneumoniaeR01GM127715 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI WINKLER, MALCOLM E. · 2018 to 2019
$630k
NIGMS NIH HHS R01 GM127715NIGMS NIH HHS R35 GM118157NIGMS NIH HHS R35 GM131767
6 · The paper itself

Abstract

Maintaining manganese (Mn) homeostasis is important for the virulence of numerous bacteria. In the human respiratory pathogen Streptococcus pneumoniae, the Mn-specific importer PsaBCA, exporter MntE, and transcriptional regulator PsaR establish Mn homeostasis. In other bacteria, Mn homeostasis is controlled by yybP-ykoY family riboswitches. Here, we characterize a yybP-ykoY family riboswitch upstream of the mgtA gene encoding a PII-type ATPase in S. pneumoniae, suggested previously to function in Ca2+ efflux. We show that the mgtA riboswitch aptamer domain adopts a canonical yybP-ykoY structure containing a three-way junction that is compacted in the presence of Ca2+ or Mn2+ at a physiological Mg2+ concentration. Although Ca2+ binds to the RNA aptamer with higher affinity than Mn2+, in vitro activation of transcription read-through of mgtA by Mn2+ is much greater than by Ca2+. Consistent with this result, mgtA mRNA and protein levels increase ≈5-fold during cellular Mn stress, but only in genetic backgrounds of S. pneumoniae and Bacillus subtilis that exhibit Mn2+ sensitivity, revealing that this riboswitch functions as a failsafe 'on' signal to prevent Mn2+ toxicity in the presence of high cellular Mn2+. In addition, our results suggest that the S. pneumoniae yybP-ykoY riboswitch functions to regulate Ca2+ efflux under these conditions.

Indexed as

Gene Expression Regulation, BacterialAdenosine TriphosphatasesAptamers, NucleotideBacillus subtilisBacterial ProteinsCalciumHomeostasisManganeseMembrane Transport ProteinsNucleic Acid ConformationRiboswitchRNA, BacterialStreptococcus pneumoniaeAdenosine TriphosphatasesAptamers, NucleotideBacterial ProteinsCalciumManganeseMembrane Transport ProteinsMgtA protein, bacteriaRiboswitchRNA, Bacterial

Identifiers

PMID31165873
PMCPMC6649816
OpenAlexW2950638087

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.