Evidence map›Paper›PMID 31165764›Full record

ArticleScientific reports2019

Protein kinase A inhibits tumor mutator APOBEC3B through phosphorylation.

Tadahiko Matsumoto, Kotaro Shirakawa, Masaru Yokoyama, Hirofumi Fukuda, Anamaria Daniela Sarca, Sukenao Koyabu, Hiroyuki Yamazaki, Yasuhiro Kazuma, Hiroyuki Matsui, Wataru Maruyama and 7 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. APOBEC mutagenesis, kataegis, chromothripsis in EGFR-mutant osimertinib-resistant lung adenocarcinomas.Annals of oncology : official journal of the European Society for Medical Oncology · 2022
    Article
  7. Article
  8. Review
  9. Review
  10. Identification of a Novel Cis-Acting Regulator of HIV-1 Genome Packaging.International journal of molecular sciences · 2021
    Article
  11. CancerFrontiers in immunology · 2021
    Article
  12. Review
  13. Molecular basis of clonal evolution in multiple myeloma.International journal of hematology · 2020
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Tadahiko MatsumotoDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Kotaro ShirakawaDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Masaru YokoyamaLaboratory of Viral Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, 208-0011, Japan.ORCID http://orcid.org/0000-0003-1641-0365
Hirofumi FukudaDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Anamaria Daniela SarcaDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0002-4468-7786
Sukenao KoyabuDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Hiroyuki YamazakiDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Yasuhiro KazumaDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Hiroyuki MatsuiDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Wataru MaruyamaDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Kayoko NagataDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Fumiko TanabeCellFree Sciences Co., Ltd, Ehime, 790-8577, Japan.
Masayuki KobayashiDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0001-8733-8458
Keisuke ShindoDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Ryo MorishitaCellFree Sciences Co., Ltd, Ehime, 790-8577, Japan.
Hironori SatoLaboratory of Viral Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, 208-0011, Japan.
Akifumi Takaori-KondoDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan. atakaori@kuhp.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0001-7678-4284

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

APOBEC3B cytidine deaminase (A3B) catalyzes cytosine into uracil in single-strand DNA and induces C-to-T mutations in genomic DNA of various types of tumors. Accumulation of APOBEC signature mutations is correlated with a worse prognosis for patients with breast cancer or multiple myeloma, suggesting that A3B activity might be a cause of the unfavorable DNA mutations and clonal evolution in these tumors. Phosphorylation of conserved threonine residues of other cytidine deaminases, activation induced deaminase (AID) and APOBEC3G, inhibits their activity. Here we show that protein kinase A (PKA) physically binds to A3B and phosphorylates Thr214. In vitro deaminase assays and foreign DNA editing assays in cells confirm that phosphomimetic A3B mutants, T214D and T214E, completely lose deaminase activity. Molecular dynamics simulation of A3B phosphorylation reveals that Thr214 phosphorylation disrupts binding between the phospho-A3B catalytic core and ssDNA. These mutants still inhibit retroviral infectivity at least partially, and also retain full anti-retrotransposition activity. These results imply that PKA-mediated phosphorylation inhibits A3B mutagenic activity without destructing its innate immune functions. Therefore, PKA activation could reduce further accumulation of mutations in A3B overexpressing tumors.

Indexed as

MutationPhosphorylationCatalytic DomainCyclic AMP-Dependent Protein Kinase Catalytic SubunitsCytidine DeaminaseCytoplasmCytosineDNA, Single-StrandedFluorescence Resonance Energy TransferHEK293 CellsHeLa CellsHumansMinor Histocompatibility AntigensMolecular Dynamics SimulationNeoplasmsThreonineAPOBEC3B protein, humanCyclic AMP-Dependent Protein Kinase Catalytic SubunitsCytidine DeaminaseCytosineDNA, Single-StrandedMinor Histocompatibility AntigensPRKACA protein, humanThreonine

Identifiers

PMID31165764
PMCPMC6549188

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.