Evidence map›Paper›PMID 31165735›Full record

ArticleNature communications2019

Disordered RNA chaperones can enhance nucleic acid folding via local charge screening.

Erik D Holmstrom, Zhaowei Liu, Daniel Nettels, Robert B Best, Benjamin Schuler

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Molecular insights into the interaction between a disordered protein and a folded RNA.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. FRET-guided modeling of nucleic acids.Nucleic acids research · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Driving forces of the complex formation between highly charged disordered proteins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Effect of Extracellular Ribonucleic Acids on Neurovascularization in Osteoarthritis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Erik D HolmstromDepartment of Biochemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland. erik.d.holmstrom@ku.edu.ORCID http://orcid.org/0000-0003-2624-0806
Zhaowei LiuDepartment of Biochemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8214-8882
Daniel NettelsDepartment of Biochemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
Robert B BestLaboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0520, USA. robert.best2@nih.gov.ORCID http://orcid.org/0000-0002-7893-3543
Benjamin SchulerDepartment of Biochemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland. schuler@bioc.uzh.ch.ORCID http://orcid.org/0000-0002-5970-4251
University of Zurich · CHNational Institutes of Health · USUniversity of Kansas · USZHAW Zurich University of Applied Sciences · CH

Funding

Understanding protein folding, evolution and function via molecular simulationZIADK075104 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BEST, ROBERT · 2013 to 2025
$13.7M
European Molecular Biology Organization (EMBO) ATLF 471-2015
6 · The paper itself

Abstract

RNA chaperones are proteins that aid in the folding of nucleic acids, but remarkably, many of these proteins are intrinsically disordered. How can these proteins function without a well-defined three-dimensional structure? Here, we address this question by studying the hepatitis C virus core protein, a chaperone that promotes viral genome dimerization. Using single-molecule fluorescence spectroscopy, we find that this positively charged disordered protein facilitates the formation of compact nucleic acid conformations by acting as a flexible macromolecular counterion that locally screens repulsive electrostatic interactions with an efficiency equivalent to molar salt concentrations. The resulting compaction can bias unfolded nucleic acids towards folding, resulting in faster folding kinetics. This potentially widespread mechanism is supported by molecular simulations that rationalize the experimental findings by describing the chaperone as an unstructured polyelectrolyte.

Indexed as

RNA FoldingDimerizationGenome, ViralHepacivirusMolecular ChaperonesNucleic AcidsNucleocapsid ProteinsRNA, ViralSingle Molecule ImagingSpectrometry, FluorescenceStatic ElectricityViral Core ProteinsMolecular ChaperonesNucleic Acidsnucleocapsid protein, Hepatitis C virusNucleocapsid ProteinsRNA, ViralViral Core Proteins

Identifiers

PMID31165735
PMCPMC6549165
OpenAlexW2948524511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.