Evidence map›Paper›PMID 31165730›Full record

ArticleNature communications2019

SAGA DUBm-mediated surveillance regulates prompt export of stress-inducible transcripts for proteostasis.

Minhoo Kim, Yoonjung Choi, Harim Kim, Daeyoup Lee

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Minhoo KimDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, South Korea.
Yoonjung ChoiDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, South Korea.
Harim KimDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, South Korea.ORCID http://orcid.org/0000-0003-1268-8888
Daeyoup LeeDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, South Korea. daeyoup@kaist.ac.kr.
Korea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During stress, prompt export of stress-inducible transcripts is critical for cell survival. Here, we characterize a function of the SAGA (Spt-Ada-Gcn5 acetyltransferase) deubiquitylating module (DUBm) in monitoring messenger ribonucleoprotein (mRNP) biogenesis to regulate non-canonical mRNA export of stress-inducible transcripts. Our genetic and biochemical analyses suggest that there is a functional relationship between Sgf73p of DUBm and the essential mRNA export factor, Yra1p. Under physiological conditions, Sgf73p is critical for the proper chromatin localization and RNA binding of Yra1p, while also quality controlling the biogenesis of mRNPs in conjunction with the nuclear exosome exonuclease, Rrp6p. Under environmental stress, when immediate transport of stress-inducible transcripts is imperative, Sgf73p facilitates the bypass of canonical surveillance and promotes the timely export of necessary transcripts. Overall, our results show that the Sgf73p-mediated plasticity of gene expression is important for the ability of cells to tolerate stress and regulate proteostasis to survive under environmental uncertainty.

Indexed as

Adaptation, PhysiologicalGene Expression Regulation, FungalStress, PhysiologicalChromatinExosome Multienzyme Ribonuclease ComplexHistone AcetyltransferasesNuclear ProteinsProteostasisRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsChromatinExosome Multienzyme Ribonuclease ComplexHistone Acetyltransferasesmessenger ribonucleoproteinNuclear ProteinsRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRRP6 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeSgf73 protein, S cerevisiaeTrans-ActivatorsYRA1 protein, S cerevisiae

Identifiers

PMID31165730
PMCPMC6549176
OpenAlexW2948776670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.