Evidence map›Paper›PMID 31164591›Full record

ArticleMethods and protocols2019

A Software Architecture to Mimic a Ventricular Tachycardia in Intact Murine Hearts by Means of an All-Optical Platform.

Francesco Giardini, Valentina Biasci, Marina Scardigli, Francesco S Pavone, Gil Bub, Leonardo Sacconi

Abstract read
In one paragraph

Article in Methods and protocols, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Optical mapping and optogenetics in cardiac electrophysiology research and therapy: a state-of-the-art review.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2024
    Review
  3. Article
  4. Article
  5. Cardiac optogenetics: a decade of enlightenment.Nature reviews. Cardiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Francesco GiardiniEuropean Laboratory for Non-Linear Spectroscopy, 50019 Sesto Fiorentino, Italy. giardini@lens.unifi.it.ORCID 0000-0001-8301-2864
Valentina BiasciEuropean Laboratory for Non-Linear Spectroscopy, 50019 Sesto Fiorentino, Italy. biasci@lens.unifi.it.
Marina ScardigliEuropean Laboratory for Non-Linear Spectroscopy, 50019 Sesto Fiorentino, Italy. scardigli@lens.unifi.it.
Francesco S PavoneEuropean Laboratory for Non-Linear Spectroscopy, 50019 Sesto Fiorentino, Italy. pavone@lens.unifi.it.
Gil BubDepartment of Physiology, McGill University, Montreal, QC H3A 0G4, Canada. gilbub@gmail.com.
Leonardo SacconiEuropean Laboratory for Non-Linear Spectroscopy, 50019 Sesto Fiorentino, Italy. sacconi@lens.unifi.it.ORCID 0000-0002-9320-5085

Funding

Ente Cassa di Risparmio di Firenze 2014/0410Horizon 2020 654148Ministero dell'Istruzione, dell'Università e della Ricerca Flagship Project NANOMAXRegione Toscana FAS-Salute ToRSADE
6 · The paper itself

Abstract

Optogenetics is an emerging method that uses light to manipulate electrical activity in excitable cells exploiting the interaction between light and light-sensitive depolarizing ion channels, such as channelrhodopsin-2 (ChR2). Initially used in the neuroscience, it has been adopted in cardiac research where the expression of ChR2 in cardiac preparations allows optical pacing, resynchronization and defibrillation. Recently, optogenetics has been leveraged to manipulate cardiac electrical activity in the intact heart in real-time. This new approach was applied to simulate a re-entrant circuit across the ventricle. In this technical note, we describe the development and the implementation of a new software package for real-time optogenetic intervention. The package consists of a single LabVIEW program that simultaneously captures images at very high frame rates and delivers precisely timed optogenetic stimuli based on the content of the images. The software implementation guarantees closed-loop optical manipulation at high temporal resolution by processing the raw data in workstation memory. We demonstrate that this strategy allows the simulation of a ventricular tachycardia with high stability and with a negligible loss of data with a temporal resolution of up to 1 ms.

Indexed as

cardiac electrophysiologychannelrhodopsin-2closed-loopLabVIEWoptical manipulationoptical mappingoptogeneticsreal-time analysisvoltage imagingvoltage sensitive dye

Identifiers

PMID31164591
PMCPMC6481051

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.