Evidence map›Paper›PMID 31164147›Full record

ArticleEpigenetics & chromatin2019

Robust hematopoietic specification requires the ubiquitous Sp1 and Sp3 transcription factors.

Jane Gilmour, Leigh O'Connor, Christopher P Middleton, Peter Keane, Nynke Gillemans, Jean-Baptiste Cazier, Sjaak Philipsen, Constanze Bonifer

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

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  11. EBF1 is continuously required for stabilizing local chromatin accessibility in pro-B cells.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jane GilmourInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Leigh O'ConnorInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Christopher P MiddletonInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Peter KeaneInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Nynke GillemansDepartment of Cell Biology, Erasmus MC, Rotterdam, The Netherlands.
Jean-Baptiste CazierCentre for Computational Biology, University of Birmingham, Birmingham, UK.
Sjaak PhilipsenDepartment of Cell Biology, Erasmus MC, Rotterdam, The Netherlands.ORCID 0000-0002-3690-1201
Constanze BoniferInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK. c.bonifer@bham.ac.uk.
University of Birmingham · GBErasmus MC · NLCancer Research UK Clinical Trials Unit · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M020800/1Blood Cancer UK 15001Medical Research Council G0901579Wellcome TrustWellcome Trust 102285/Z/13/ZZonMw TOP 40-00812-98-08032
6 · The paper itself

Abstract

backgroundBoth tissue-specific and ubiquitously expressed transcription factors, such as Sp-family members, are required for correct development. However, the molecular details of how ubiquitous factors are involved in programming tissue-specific chromatin and thus participate in developmental processes are still unclear. We previously showed that embryonic stem cells lacking Sp1 DNA-binding activity (Sp1

resultsHere, we studied the cooperation of Sp1 with its closest paralogue Sp3 in hematopoietic development and demonstrate that Sp1 and Sp3 binding sites largely overlap. The complete absence of either Sp1 or Sp3 or the presence of the Sp1 DNA-binding mutant has only a minor effect on the pattern of distal accessible chromatin sites and their transcription factor binding motif content, suggesting that these mutations do not affect tissue-specific chromatin programming. Sp3 cooperates with Sp1

conclusionsOur findings highlight the essential contribution of ubiquitous factors such as Sp1 to blood cell development. In contrast to tissue-specific transcription factors which are required to direct specific cell fates, loss of Sp1 leads to a widespread deregulation in timing and coordination of differentiation trajectories during hematopoietic specification.

Indexed as

AnimalsBinding SitesCell DifferentiationCell LineDNA-Binding ProteinsEmbryonic Stem CellsHematopoietic Stem CellsMicePromoter Regions, GeneticProtein BindingSp1 Transcription FactorSp3 Transcription FactorTranscription FactorsTranscription, GeneticDNA-Binding ProteinsSp1 Transcription FactorSp3 Transcription FactorTranscription FactorsATAC-seqBlood cell developmentDifferentiation trajectoriesEmbryonic developmentSingle-cell RNA-seqTranscription factor cooperation

Identifiers

PMID31164147
PMCPMC6547542
OpenAlexW2948693019

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.