Evidence map›Paper›PMID 31162141›Full record

ArticleThe Journal of clinical investigation2019

Systemic silencing of PHD2 causes reversible immune regulatory dysfunction.

Atsushi Yamamoto, Joanna Hester, Philip S Macklin, Kento Kawai, Masateru Uchiyama, Daniel Biggs, Tammie Bishop, Katherine Bull, Xiaotong Cheng, Eleanor Cawthorne and 15 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. PHD1-3 oxygen sensors in vivo-lessons learned from gene deletions.Pflugers Archiv : European journal of physiology · 2024
    Review
  3. Article
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  13. Hypoxia-inducible factor signaling in pulmonary hypertension.The Journal of clinical investigation · 2020
    Review
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 3 countries.

Atsushi YamamotoNuffield Department of Medicine Research Building, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Joanna HesterTransplantation Research Immunology Group, Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom.
Philip S MacklinNuffield Department of Medicine Research Building, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Kento KawaiTransplantation Research Immunology Group, Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom.
Masateru UchiyamaTransplantation Research Immunology Group, Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom.
Daniel BiggsWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Tammie BishopNuffield Department of Medicine Research Building, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Katherine BullHenry Wellcome Building for Molecular Physiology, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Xiaotong ChengNuffield Department of Medicine Research Building, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Eleanor CawthorneHenry Wellcome Building for Molecular Physiology, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Mathew L ColemanHenry Wellcome Building for Molecular Physiology, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Tanya L CrockfordHenry Wellcome Building for Molecular Physiology, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Ben DaviesWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Lukas E DowSandra and Edward Meyer Cancer Center, Weill Cornell Medicine, New York, New York, USA.
Rob GoldinDepartment of Cellular Pathology, Imperial College London, London, United Kingdom.
Kamil KrancMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Hiromi KudoDepartment of Cellular Pathology, Imperial College London, London, United Kingdom.
Hannah LawsonMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
James McAuliffeLudwig Institute for Cancer Research, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Kate MilwardTransplantation Research Immunology Group, Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom.
Cheryl L ScudamoreVeterinary Pathology, MRC Harwell, Mary Lyon Centre, Harwell Campus, Oxford, United Kingdom.
Elizabeth SoilleuxDepartment of Pathology, School of Biological Sciences, University of Cambridge, Cambridge, United Kingdom.
Fadi IssaTransplantation Research Immunology Group, Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom.
Peter J RatcliffeNuffield Department of Medicine Research Building, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Chris W PughNuffield Department of Medicine Research Building, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
University of Oxford · GBNuffield Foundation · GBCentre for Human Genetics · GBImperial College London · GBMRC Centre for Regenerative Medicine · GBCornell University · USMary Lyon Centre at MRC Harwell · GBThe Francis Crick Institute · GBUniversity of Cambridge · GB

Funding

British Heart Foundation RG/11/1/28684Cancer Research UK 14633Cancer Research UK 24552Cancer Research UK 26787HSRD VA CDP 13-005Medical Research Council MR/N021053/1Medical Research Council MR/P010008/1Medical Research Council MR/P010008/2Medical Research Council MR/R007748/1Wellcome Trust FC001501
6 · The paper itself

Abstract

Physiological effects of cellular hypoxia are sensed by prolyl hydroxylase (PHD) enzymes which regulate HIFs. Genetic interventions on HIF/PHD pathways reveal multiple phenotypes that extend the known biology of hypoxia. Recent studies unexpectedly implicate HIF in aspects of multiple immune and inflammatory pathways. However such studies are often limited by systemic lethal effects and/or use tissue-specific recombination systems, which are inherently irreversible, un-physiologically restricted and difficult to time. To study these processes better we developed recombinant mice which express tetracycline-regulated shRNAs broadly targeting the main components of the HIF/PHD pathway, permitting timed bi-directional intervention. We have shown that stabilization of HIF levels in adult mice through PHD2 enzyme silencing by RNA interference, or inducible recombination of floxed alleles, results in multi-lineage leukocytosis and features of autoimmunity. This phenotype was rapidly normalized on re-establishment of the hypoxia-sensing machinery when shRNA expression was discontinued. In both situations these effects were mediated principally through the Hif2a isoform. Assessment of cells bearing regulatory T cell markers from these mice revealed defective function and pro-inflammatory effects in vivo. We believe our findings have shown a new role for the PHD2/Hif2a couple in the reversible regulation of T cell and immune activity.

Indexed as

Hypoxia-Inducible Factor-Proline DioxygenasesSignal TransductionT-Lymphocytes, RegulatoryAnimalsBasic Helix-Loop-Helix ProteinsEndothelial PAS Domain-Containing Protein 1MiceMice, TransgenicRNA InterferenceBasic Helix-Loop-Helix ProteinsEgln1 protein, mouseEndothelial PAS Domain-Containing Protein 1Hypoxia-Inducible Factor-Proline DioxygenasesAutoimmune diseaseshypoxiaImmunologyMouse modelsTherapeutics

Identifiers

PMID31162141
PMCPMC6715380
OpenAlexW2948752663

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.