ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019
QTL mapping pod dehiscence resistance in soybean (Glycine max L. Merr.) using specific-locus amplified fragment sequencing.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed, 32 citations in OpenAlex.
- Stable loci and functional gene controlling pod shattering resistance across multiple environments under different genetic backgrounds in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Pod Dehiscence in Soybean: Genome Wide Association Study and Genomic Prediction.Plants (Basel, Switzerland) · 2025Article
- Physiological and transcriptomic analysis provide new insight into seed shattering mechanism in Carex breviculmis 'Siji'.Plant cell reports · 2025Article
- Article
- Development of a web-based high-throughput marker design program: CAPS (cleaved amplified polymorphic sequence) Maker.Plant methods · 2024Article
- Paralogous Gene Recruitment in Multiple Families Constitutes Genetic Architecture and Robustness of Pod Dehiscence in Legumes.Genome biology and evolution · 2024Article
- AInternational journal of genomics · 2024Article
- A SLAF-based high-density genetic map construction and genetic architecture of thermotolerant traits in maize (Frontiers in plant science · 2024Article
- Fine mapping of the reduced height gene Rht22 in tetraploid wheat landrace Jianyangailanmai (Triticum turgidum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- QTL Mapping of Palmitic Acid Content Using Specific-Locus Amplified Fragment Sequencing (SLAF-Seq) Genotyping in Soybeans (International journal of molecular sciences · 2022Article
- High-resolution detection of quantitative trait loci for seven important yield-related traits in wheat (Triticum aestivum L.) using a high-density SLAF-seq genetic map.BMC genomic data · 2022Article
- Development and Validation of SNP and InDel Markers for Pod-Shattering Tolerance in Soybean.International journal of molecular sciences · 2022Article
- Article
- Identification of genetic loci conferring seed coat color based on a high-density map in soybean.Frontiers in plant science · 2022Article
- Genetic Diversity, QTL Mapping, and Marker-Assisted Selection Technology in Cotton (Frontiers in plant science · 2021Review
- QTL Mapping and Candidate Gene Analysis for Pod Shattering Tolerance in Soybean (Plants (Basel, Switzerland) · 2020Article
- Identification and Validation of New Stable QTLs for Grain Weight and Size by Multiple Mapping Models in Common Wheat.Frontiers in genetics · 2020Article
- Quantitative Trait Locus (QTLs) Mapping for Quality Traits of Wheat Based on High Density Genetic Map Combined With Bulked Segregant Analysis RNA-seq (BSR-Seq) Indicates That theFrontiers in plant science · 2020Article
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Authors and funding
7 authors at 2 institutions in 1 country.
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Abstract
key messageWe constructed a high-density genetic linkage map comprising 4,593 SLAF markers using specific-locus amplified fragment sequencing and identified six quantitative trait loci for pod dehiscence resistance in soybean. Pod dehiscence is necessary for propagation in wild soybean (Glycine soja). It is a major component causing yield losses in cultivated soybean, however, and thus, cultivated soybean varieties have been artificially selected for resistance to pod dehiscence. Detecting quantitative trait loci (QTLs) related to pod dehiscence is required for molecular marker-assisted selection for breeding new varieties with pod dehiscence resistance. In this study, we constructed a high-density genetic linkage map using 260 recombinant inbred lines derived from the cultivars of Heihe 43 (pod-indehiscent) (ZDD24325) and Heihe 18 (pod-dehiscent) (ZDD23620). The map contained 4953 SLAF markers spanning 1478.86 cM on 20 linkage groups with an average distance between adjacent markers of 0.53 cM. In total, six novel QTLs related to pod dehiscence were mapped using inclusive composite interval mapping, explaining 7.22-24.44% of the phenotypic variance across 3 years, including three stable QTLs (qPD01, qPD05-1 and qPD08-1), that had been validated by developing CAPS/dCAPS markers. Based on the SNP/Indel and significant differential expression analyses of two parents, seven genes were selected as candidate genes for future study. The high-density map, three stable QTLs and their molecular markers will be helpful for map-based cloning of pod dehiscence resistance genes and marker-assisted selection of pod dehiscence resistance in soybean breeding.
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