Evidence map›Paper›PMID 31160784›Full record

ArticleNature structural & molecular biology2019

Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.

Wenfei Li, Fred R Ward, Kim F McClure, Stacey Tsai-Lan Chang, Elizabeth Montabana, Spiros Liras, Robert G Dullea, Jamie H D Cate

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 84 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
    Review
  5. Evolution of a core ribosomal innovation in octopus.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. SVC112: From Hummingbirds to Head and Neck Cancer.Advances in experimental medicine and biology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Puromycin reveals a distinct conformation of neuronal ribosomes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Wenfei LiDepartment of Molecular & Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Fred R WardDepartment of Molecular & Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Kim F McClurePfizer Medicinal Chemistry, Pfizer Worldwide Research and Development, Cambridge, MA, USA.
Stacey Tsai-Lan ChangDepartment of Molecular & Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Elizabeth MontabanaMolecular Biophysics and Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Spiros LirasPfizer Medicinal Chemistry, Pfizer Worldwide Research and Development, Cambridge, MA, USA.
Robert G DulleaCardiovascular, Metabolic and Endocrine Disease Research Unit, Pfizer Worldwide Research and Development, Cambridge, MA, USA.
Jamie H D CateDepartment of Molecular & Cell Biology, University of California, Berkeley, Berkeley, CA, USA. jcate@lbl.gov.ORCID http://orcid.org/0000-0001-5965-7902
Lawrence Berkeley National Laboratory · USPfizer (United States) · USUniversity of California, Berkeley · US

Funding

TUBULIN STRUCTURE BY ELECTRON CRYSTALLOGRAPHYP01GM051487 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CATE, JAMIE H · 1994 to 2018
$27.6M
The Role of the Ribosome in the Accuracy of TranslationR01GM065050 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CATE, JAMIE H · 2001 to 2022
$7.4M
Selective Stalling of Human Translation by Small MoleculesR01GM131142 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CATE, JAMIE H · 2019 to 2022
$1.2M
NIGMS NIH HHS P01 GM051487NIGMS NIH HHS R01 GM065050NIGMS NIH HHS R01 GM131142
6 · The paper itself

Abstract

The drug-like molecule PF-06446846 (PF846) binds the human ribosome and selectively blocks the translation of a small number of proteins by an unknown mechanism. In structures of PF846-stalled human ribosome nascent chain complexes, PF846 binds in the ribosome exit tunnel in a eukaryotic-specific pocket formed by 28S ribosomal RNA, and alters the path of the nascent polypeptide chain. PF846 arrests the translating ribosome in the rotated state of translocation, in which the peptidyl-transfer RNA 3'-CCA end is improperly docked in the peptidyl transferase center. Selections of messenger RNAs from mRNA libraries using translation extracts reveal that PF846 can stall translation elongation, arrest termination or even enhance translation, depending on nascent chain sequence context. These results illuminate how a small molecule selectively targets translation by the human ribosome, and provides a foundation for developing small molecules that modulate the production of proteins of therapeutic interest.

Indexed as

HeLa CellsHeterocyclic Compounds, 4 or More RingsHumansModels, MolecularProtein BiosynthesisRibosomesRNA, MessengerRNA, TransferHeterocyclic Compounds, 4 or More RingsPF-06446846RNA, MessengerRNA, Transfer

Identifiers

PMID31160784
PMCPMC6919564
OpenAlexW2949326885

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.