Evidence map›Paper›PMID 31160782›Full record

ArticleNature structural & molecular biology2019

Structural snapshots of actively transcribing influenza polymerase.

Tomas Kouba, Petra Drncová, Stephen Cusack

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tomas Kouba *European Molecular Biology Laboratory, Grenoble, France.
Petra Drncová *European Molecular Biology Laboratory, Grenoble, France.
Stephen CusackEuropean Molecular Biology Laboratory, Grenoble, France. cusack@embl.fr.ORCID http://orcid.org/0000-0002-9324-0796

Funding

European Research Council 322586
6 · The paper itself

Abstract

Influenza virus RNA-dependent RNA polymerase uses unique mechanisms to transcribe its single-stranded genomic viral RNA (vRNA) into messenger RNA. The polymerase is initially bound to a promoter comprising the partially base-paired 3' and 5' extremities of the RNA. A short, capped primer, 'cap-snatched' from a nascent host polymerase II transcript, is directed towards the polymerase active site to initiate RNA synthesis. Here we present structural snapshots, as determined by X-ray crystallography and cryo-electron microscopy, of actively initiating influenza polymerase as it transitions towards processive elongation. Unexpected conformational changes unblock the active site cavity to allow establishment of a nine-base-pair template-product RNA duplex before the strands separate into distinct exit channels. Concomitantly, as the template translocates, the promoter base pairs are broken and the template entry region is remodeled. These structures reveal details of the influenza polymerase active site that will help optimize nucleoside analogs or other compounds that directly inhibit viral RNA synthesis.

Indexed as

BetainfluenzavirusCatalytic DomainCrystallography, X-RayHumansInfluenza, HumanModels, MolecularProtein ConformationRNA-Dependent RNA PolymeraseRNA, ViralTranscription Elongation, GeneticTranscription Initiation, GeneticViral Proteinsinfluenza virus polymerase basic protein 1PA protein, influenza virusesPB2 protein, influenza virusRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

PMID31160782
PMCPMC7610713

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.