Evidence map›Paper›PMID 31160781›Full record

ArticleNature structural & molecular biology2019

Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc.

Yongchan Lee, Pattama Wiriyasermkul, Chunhuan Jin, Lili Quan, Ryuichi Ohgaki, Suguru Okuda, Tsukasa Kusakizako, Tomohiro Nishizawa, Kazumasa Oda, Ryuichiro Ishitani and 7 more

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed, 1 pooled it
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 1 synthesis or guideline pooled it, 174 citations in OpenAlex.

  1. L-3-[International journal of molecular sciences · 2025
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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 3 countries.

Yongchan LeeDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-1507-805X
Pattama WiriyasermkulDepartment of Collaborative Research for Bio-Molecular Dynamics, Nara Medical University, Nara, Japan.
Chunhuan JinDepartment of Bio-system Pharmacology, Graduate School of Medicine, Osaka University, Osaka, Japan.
Lili QuanDepartment of Bio-system Pharmacology, Graduate School of Medicine, Osaka University, Osaka, Japan.
Ryuichi OhgakiDepartment of Bio-system Pharmacology, Graduate School of Medicine, Osaka University, Osaka, Japan.
Suguru OkudaDepartment of Bio-system Pharmacology, Graduate School of Medicine, Osaka University, Osaka, Japan.
Tsukasa KusakizakoDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Tomohiro NishizawaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0001-7463-8398
Kazumasa OdaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Ryuichiro IshitaniDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Takeshi YokoyamaLaboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, Kanagawa, Japan.
Takanori NakaneDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0003-2697-2767
Mikako ShirouzuLaboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, Kanagawa, Japan.
Hitoshi EndouJ-Pharma Co., Ltd, Kanagawa, Japan.
Shushi NagamoriDepartment of Collaborative Research for Bio-Molecular Dynamics, Nara Medical University, Nara, Japan.
Yoshikatsu KanaiDepartment of Bio-system Pharmacology, Graduate School of Medicine, Osaka University, Osaka, Japan.
Osamu NurekiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan. nureki@bs.s.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0003-1813-7008
The University of Osaka · JPThe University of Tokyo · JPRIKEN Center for Biosystems Dynamics Research · JPMax Planck Institute of Biophysics · DEMRC Laboratory of Molecular Biology · GBNara Medical University · JPPreferred Networks (Japan) · JPShiseido Group (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The L-type amino acid transporter 1 (LAT1 or SLC7A5) transports large neutral amino acids across the membrane and is crucial for brain drug delivery and tumor growth. LAT1 forms a disulfide-linked heterodimer with CD98 heavy chain (CD98hc, 4F2hc or SLC3A2), but the mechanism of assembly and amino acid transport are poorly understood. Here we report the cryo-EM structure of the human LAT1-CD98hc heterodimer at 3.3-Å resolution. LAT1 features a canonical Leu T-fold and exhibits an unusual loop structure on transmembrane helix 6, creating an extended cavity that might accommodate bulky amino acids and drugs. CD98hc engages with LAT1 through the extracellular, transmembrane and putative cholesterol-mediated interactions. We also show that two anti-CD98 antibodies recognize distinct, multiple epitopes on CD98hc but not its glycans, explaining their robust reactivities. These results reveal the principles of glycoprotein-solute carrier assembly and provide templates for improving preclinical drugs and antibodies targeting LAT1 or CD98hc.

Indexed as

Cryoelectron MicroscopyFusion Regulatory Protein 1, Heavy ChainHumansLarge Neutral Amino Acid-Transporter 1Models, MolecularProtein ConformationProtein FoldingProtein MultimerizationFusion Regulatory Protein 1, Heavy ChainLarge Neutral Amino Acid-Transporter 1SLC3A2 protein, humanSLC7A5 protein, human

Identifiers

PMID31160781
OpenAlexW2949140641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.