Evidence map›Paper›PMID 31160780›Full record

ArticleNature structural & molecular biology2019

Structures of the otopetrin proton channels Otop1 and Otop3.

Kei Saotome, Bochuan Teng, Che Chun Alex Tsui, Wen-Hsin Lee, Yu-Hsiang Tu, Joshua P Kaplan, Mark S P Sansom, Emily R Liman, Andrew B Ward

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
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  6. Artificial Nervous Systems.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
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  10. Review
  11. Review
  12. Article
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  14. Article
  15. Article
  16. Article
  17. Transcendent Aspects of Proton Channels.Annual review of physiology · 2024
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Kei SaotomeDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Bochuan Teng *Section of Neurobiology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-7918-484X
Che Chun Alex Tsui *Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-4886-9824
Wen-Hsin LeeDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-9445-6671
Yu-Hsiang TuSection of Neurobiology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Joshua P KaplanSection of Neurobiology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Mark S P SansomDepartment of Biochemistry, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-6360-7959
Emily R LimanSection of Neurobiology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA. liman@usc.edu.ORCID http://orcid.org/0000-0003-4765-5496
Andrew B WardDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA. andrew@scripps.edu.ORCID http://orcid.org/0000-0001-7153-3769
Scripps Research Institute · USUniversity of Southern California · USUniversity of Oxford · GB

Funding

Role of the proton channel OTOP1 in taste transductionR01DC013741 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Sue C. Kinnamon, EMILY R. LIMAN · 2014 to 2026
$5.7M
Cellular Physiology of Otopetrin Proton ChannelsR01GM131234 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LIMAN, EMILY R. · 2019 to 2022
$1.4M
Biotechnology and Biological Sciences Research Council BB/R00126X/1NIDCD NIH HHS R01 DC013741Wellcome Trust 208361
6 · The paper itself

Abstract

Otopetrins (Otop1-Otop3) comprise one of two known eukaryotic proton-selective channel families. Otop1 is required for otoconia formation and a candidate mammalian sour taste receptor. Here we report cryo-EM structures of zebrafish Otop1 and chicken Otop3 in lipid nanodiscs. The structures reveal a dimeric architecture, with each subunit forming 12 transmembrane helices divided into structurally similar amino (N) and carboxy (C) domains. Cholesterol-like molecules occupy various sites in Otop1 and Otop3 and occlude a central tunnel. In molecular dynamics simulations, hydrophilic vestibules formed by the N and C domains and in the intrasubunit interface between N and C domains form conduits for water entry into the membrane core, suggesting three potential proton conduction pathways. By mutagenesis, we tested the roles of charged residues in each putative permeation pathway. Our results provide a structural basis for understanding selective proton permeation and gating of this conserved family of proton channels.

Indexed as

ChickensZebrafishAnimalsAvian ProteinsCryoelectron MicroscopyHydrophobic and Hydrophilic InteractionsIon ChannelsMembrane ProteinsModels, MolecularProtein ConformationProtein DomainsProtein MultimerizationProton PumpsZebrafish ProteinsAvian ProteinsIon ChannelsMembrane Proteinsotop1 protein, zebrafishProton PumpsZebrafish Proteins

Identifiers

PMID31160780
PMCPMC6564688
OpenAlexW2914266481

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.