Evidence map›Paper›PMID 31160710›Full record

ArticleNature cell biology2019

Mapping phospho-catalytic dependencies of therapy-resistant tumours reveals actionable vulnerabilities.

Jean-Philippe Coppé, Miki Mori, Bo Pan, Christina Yau, Denise M Wolf, Ana Ruiz-Saenz, Diede Brunen, Anirudh Prahallad, Paulien Cornelissen-Steijger, Kristel Kemper and 10 more

Abstract read
In one paragraph

Article in Nature cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Jean-Philippe CoppéHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA. Jean-Philippe.Coppe@ucsf.edu.ORCID http://orcid.org/0000-0002-0890-8326
Miki MoriHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Bo PanHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Christina YauHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Denise M WolfHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Ana Ruiz-SaenzHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6033-6153
Diede BrunenDivision of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Anirudh PrahalladDivision of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Paulien Cornelissen-SteijgerDivision of Molecular Oncology and Immunology, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Kristel KemperDivision of Molecular Oncology and Immunology, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Christian PoschHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0296-3567
Changjun WangHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Courtney A DreyerHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Oscar KrijgsmanDivision of Molecular Oncology and Immunology, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Pei Rong Evelyn LeeHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Zhongzhong ChenThe State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China.
Daniel S PeeperDivision of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Mark M MoasserHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-4411-4336
René BernardsDivision of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID http://orcid.org/0000-0001-8677-3423
Laura J van 't VeerHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.

Funding

University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
Using Networks to Seed Hierarchical Whole-cell Models of CancerU54CA209891 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI IDEKER, TREY · 2017 to 2021
$10.9M
Understanding resistance to HER family tyrosine kinase inhibitorsR01CA122216 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MOASSER, MARK M · 2007 to 2017
$3.0M
NCATS NIH HHS UL1 TR000005NCI NIH HHS R01 CA122216NCI NIH HHS U54 CA209891
6 · The paper itself

Abstract

Phosphorylation networks intimately regulate mechanisms of response to therapies. Mapping the phospho-catalytic profile of kinases in cells or tissues remains a challenge. Here, we introduce a practical high-throughput system to measure the enzymatic activity of kinases using biological peptide targets as phospho-sensors to reveal kinase dependencies in tumour biopsies and cell lines. A 228-peptide screen was developed to detect the activity of >60 kinases, including ABLs, AKTs, CDKs and MAPKs. Focusing on BRAF

Indexed as

3-Phosphoinositide-Dependent Protein KinasesAdultAgedCell Line, TumorColorectal NeoplasmsDrug Resistance, NeoplasmFemaleGene Expression Regulation, NeoplasticHumansIndolesKaplan-Meier EstimateMaleMAP Kinase Signaling SystemMelanomaMiddle AgedPeptides3-Phosphoinositide-Dependent Protein KinasesIndolesPDPK1 protein, humanPeptidesPIM1 protein, humanPRKCA protein, humanProtein Kinase C-alphaProtein Kinase InhibitorsProto-Oncogene Proteins c-pim-1Sulfonamides

Identifiers

PMID31160710
PMCPMC7170003

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.