Evidence map›Paper›PMID 31160634›Full record

ArticleScientific reports2019

Transcriptomic analysis of resistant and susceptible banana corms in response to infection by Fusarium oxysporum f. sp. cubense tropical race 4.

Lei Zhang, Alberto Cenci, Mathieu Rouard, Dong Zhang, Yunyue Wang, Weihua Tang, Si-Jun Zheng

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Adaptive Responses of Tropical Crops: A Multi-Scale Omics Integrated Perspective.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2023
    Article
  15. Characterization of microRNAs and Target Genes inPlants (Basel, Switzerland) · 2023
    Article
  16. Review
  17. Article
  18. Transcriptome Profiling of the Resistance Response ofInternational journal of molecular sciences · 2022
    Article
  19. Article
  20. Infection by3 Biotech · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 4 countries.

Lei ZhangState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Yunnan Agricultural University, Kunming, 650201, China.
Alberto CenciBioversity International, Parc Scientifique Agropolis II, 34397, Montpellier, Cedex 5, France.
Mathieu RouardBioversity International, Parc Scientifique Agropolis II, 34397, Montpellier, Cedex 5, France.ORCID http://orcid.org/0000-0003-0284-1885
Dong ZhangNational Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, China.
Yunyue WangState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Yunnan Agricultural University, Kunming, 650201, China. 1371209436@qq.com.
Weihua TangNational Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, China. whtang@sibs.ac.cn.ORCID http://orcid.org/0000-0002-6167-7870
Si-Jun ZhengAgricultural Environment and Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, China. s.zheng@cgiar.org.
Agropolis International · FRChinese Academy of Sciences · CNYunnan Agricultural University · CNAlliance Bioversity International - CIAT · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium wilt disease, caused by Fusarium oxysporum f. sp. cubense, especially by tropical race 4 (Foc TR4), is threatening the global banana industry. Musa acuminata Pahang, a wild diploid banana that displays strong resistance to Foc TR4, holds great potential to understand the underlying resistance mechanisms. Microscopic examination reports that, in a wounding inoculation system, the Foc TR4 infection processes in roots of Pahang (resistant) and a triploid cultivar Brazilian (susceptible) were similar by 7 days post inoculation (dpi), but significant differences were observed in corms of both genotypes at 14 dpi. We compare transcriptomic responses in the corms of Pahang and Brazilian, and show that Pahang exhibited constitutive defense responses before Foc TR4 infection and inducible defense responses prior to Brazilian at the initial Foc TR4 infection stage. Most key enzymatic genes in the phenylalanine metabolism pathway were up-regulated in Brazilian, suggesting that lignin and phytotoxin may be triggered during later stages of Foc TR4 infection. This study unravels a few potential resistance candidate genes whose expression patterns were assessed by RT-qPCR assay and improves our understanding the defense mechanisms of Pahang response to Foc TR4.

Indexed as

TranscriptomeCatechol OxidaseCell WallDisease ResistanceFusariumGene Expression ProfilingGene Expression Regulation, PlantGenome, PlantGenotypeMicroscopyMusaPlant DiseasesPlant RootsCatechol Oxidase

Identifiers

PMID31160634
PMCPMC6546912
OpenAlexW2948316930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.