Evidence map›Paper›PMID 31160609›Full record

ArticleScientific reports2019

Functional characterisation of a novel class of in-frame insertion variants of KRAS and HRAS.

Astrid Eijkelenboom, Frederik M A van Schaik, Robert M van Es, Roel W Ten Broek, Tuula Rinne, Carine van der Vleuten, Uta Flucke, Marjolijn J L Ligtenberg, Holger Rehmann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

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  9. The Journal of biological chemistry · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Astrid EijkelenboomDepartment of Pathology, Radboud university medical center, Nijmegen, The Netherlands.
Frederik M A van SchaikDepartment of Molecular Cancer Research, Center for Molecular Medicine, Oncode Institute, University Medical Center Utrecht, Utrecht, 3584 CX, The Netherlands.
Robert M van EsDepartment of Molecular Cancer Research, Center for Molecular Medicine, Oncode Institute, University Medical Center Utrecht, Utrecht, 3584 CX, The Netherlands.
Roel W Ten BroekDepartment of Pathology, Radboud university medical center, Nijmegen, The Netherlands.
Tuula RinneDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-4350-8106
Carine van der VleutenDepartment of Dermatology, Radboudumc Center of Expertise Hecovan, Radboud university medical center, Nijmegen, The Netherlands.
Uta FluckeDepartment of Pathology, Radboud university medical center, Nijmegen, The Netherlands.
Marjolijn J L LigtenbergDepartment of Pathology, Radboud university medical center, Nijmegen, The Netherlands.
Holger RehmannDepartment of Molecular Cancer Research, Center for Molecular Medicine, Oncode Institute, University Medical Center Utrecht, Utrecht, 3584 CX, The Netherlands. h.rehmann@umcUtrecht.nl.
Radboud University Nijmegen · NLUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in the RAS genes are identified in a variety of clinical settings, ranging from somatic mutations in oncology to germline mutations in developmental disorders, also known as 'RASopathies', and vascular malformations/overgrowth syndromes. Generally single amino acid substitutions are identified, that result in an increase of the GTP bound fraction of the RAS proteins causing constitutive signalling. Here, a series of 7 in-frame insertions and duplications in HRAS (n = 5) and KRAS (n = 2) is presented, resulting in the insertion of 7-10 amino acids residues in the switch II region. These variants were identified in routine diagnostic screening of 299 samples for somatic mutations in vascular malformations/overgrowth syndromes (n = 6) and in germline analyses for RASopathies (n = 1). Biophysical characterization shows the inability of Guanine Nucleotide Exchange Factors to induce GTP loading and reduced intrinsic and GAP-stimulated GTP hydrolysis. As a consequence of these opposing effects, increased RAS signalling is detected in a cellular model system. Therefore these in-frame insertions represent a new class of weakly activating clinically relevant RAS variants.

Indexed as

Amino Acid SequenceCohort StudiesFrameshift MutationGTP PhosphohydrolasesGuanine Nucleotide Exchange FactorsGuanosine TriphosphateHumansHydrolysisModels, MolecularMutagenesis, InsertionalMutant ProteinsProto-Oncogene Proteins p21(ras)GTP PhosphohydrolasesGuanine Nucleotide Exchange FactorsGuanosine TriphosphateHRAS protein, humanKRAS protein, humanMutant ProteinsProto-Oncogene Proteins p21(ras)

Identifiers

PMID31160609
PMCPMC6547725
OpenAlexW2948124221

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.