Evidence map›Paper›PMID 31160381›Full record

ArticleLife science alliance2019

ATP hydrolysis by KaiC promotes its KaiA binding in the cyanobacterial circadian clock system.

Yasuhiro Yunoki, Kentaro Ishii, Maho Yagi-Utsumi, Reiko Murakami, Susumu Uchiyama, Hirokazu Yagi, Koichi Kato

Abstract read
In one paragraph

Article in Life science alliance, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Regulation mechanisms of the dual ATPase in KaiC.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yasuhiro YunokiGraduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan.
Kentaro IshiiGraduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan.
Maho Yagi-UtsumiGraduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan.
Reiko MurakamiGraduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan.
Susumu UchiyamaExploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, Okazaki, Japan.
Hirokazu YagiGraduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan hyagi@phar.nagoya-cu.ac.jp.ORCID 0000-0001-9296-0225
Koichi KatoGraduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan kkato@excells.orion.ac.jp.ORCID 0000-0001-7187-9612

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cyanobacterial clock is controlled via the interplay among KaiA, KaiB, and KaiC, which generate a periodic oscillation of KaiC phosphorylation in the presence of ATP. KaiC forms a homohexamer harboring 12 ATP-binding sites and exerts ATPase activities associated with its autophosphorylation and dephosphorylation. The KaiC nucleotide state is a determining factor of the KaiB-KaiC interaction; however, its relationship with the KaiA-KaiC interaction has not yet been elucidated. With the attempt to address this, our native mass spectrometric analyses indicated that ATP hydrolysis in the KaiC hexamer promotes its interaction with KaiA. Furthermore, our nuclear magnetic resonance spectral data revealed that ATP hydrolysis is coupled with conformational changes in the flexible C-terminal segments of KaiC, which carry KaiA-binding sites. From these data, we conclude that ATP hydrolysis in KaiC is coupled with the exposure of its C-terminal KaiA-binding sites, resulting in its high affinity for KaiA. These findings provide mechanistic insights into the ATP-mediated circadian periodicity.

Indexed as

Circadian ClocksAdenosine TriphosphateBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsCyanobacteriaHydrolysisMagnetic Resonance SpectroscopyModels, MolecularMolecular ConformationPhosphorylationProtein BindingStructure-Activity RelationshipAdenosine TriphosphateBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsKaiA protein, cyanobacteriaKaiC protein, cyanobacteria

Identifiers

PMID31160381
PMCPMC6549140

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.