Evidence map›Paper›PMID 31160323›Full record

ArticleThe Journal of biological chemistry2019

Structural basis for substrate selectivity and nucleophilic substitution mechanisms in human adenine phosphoribosyltransferase catalyzed reaction.

Mohammad Ozeir, Jessica Huyet, Marie-Claude Burgevin, Benoît Pinson, Françoise Chesney, Jean-Marc Remy, Abdul Rauf Siddiqi, Roland Lupoli, Grégory Pinon, Christelle Saint-Marc and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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  9. How a purine salvage enzyme singles out the right base.The Journal of biological chemistry · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Mohammad OzeirUniversité Paris Descartes, Sorbonne Paris Cité, UFR des Sciences Fondamentales et Biomédicales, UMR 1124, Centre Interdisciplinaire Chimie Biologie-Paris, Paris, 75006, France; INSERM, UMR 1124, Paris, 75006, France.
Jessica HuyetUniversité Paris Descartes, Sorbonne Paris Cité, UFR des Sciences Fondamentales et Biomédicales, UMR 1124, Centre Interdisciplinaire Chimie Biologie-Paris, Paris, 75006, France; INSERM, UMR 1124, Paris, 75006, France.
Marie-Claude BurgevinSanofi R&D, Translational Science Unit, Chilly-Mazarin, 91385, France.
Benoît PinsonUniversité de Bordeaux, Institut de Biochimie et Génétique Cellulaires, CNRS UMR 5095, Bordeaux cedex, 33077, France.
Françoise ChesneySanofi R&D, Translational Science Unit, Chilly-Mazarin, 91385, France.
Jean-Marc RemySanofi R&D, Translational Science Unit, Chilly-Mazarin, 91385, France.
Abdul Rauf SiddiqiDepartment of Biosciences, COMSATS Institute of Information Technology, Islamabad, 45550, Pakistan.
Roland LupoliUniversité Paris Descartes, Sorbonne Paris Cité, UFR des Sciences Fondamentales et Biomédicales, UMR 1124, Centre Interdisciplinaire Chimie Biologie-Paris, Paris, 75006, France; INSERM, UMR 1124, Paris, 75006, France.
Grégory PinonUniversité Paris Descartes, Sorbonne Paris Cité, UFR des Sciences Fondamentales et Biomédicales, UMR 1124, Centre Interdisciplinaire Chimie Biologie-Paris, Paris, 75006, France; INSERM, UMR 1124, Paris, 75006, France; Université Paris Descartes, Structural and Molecular Analysis Platform, Paris, 75006, France.
Christelle Saint-MarcUniversité de Bordeaux, Institut de Biochimie et Génétique Cellulaires, CNRS UMR 5095, Bordeaux cedex, 33077, France.
Jean-François GibertSanofi R&D, Translational Science Unit, Chilly-Mazarin, 91385, France.
Renaud MoralesSanofi R&D, Translational Science Unit, Chilly-Mazarin, 91385, France.
Irène Ceballos-PicotLaboratoire de Biochimie Métabolomique et Protéomique, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine Paris Descartes, 75006, France.
Robert BaroukiUniversité Paris Descartes, Sorbonne Paris Cité, UFR des Sciences Fondamentales et Biomédicales, UMR 1124, Centre Interdisciplinaire Chimie Biologie-Paris, Paris, 75006, France; INSERM, UMR 1124, Paris, 75006, France; Laboratoire de Biochimie Métabolomique et Protéomique, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine Paris Descartes, 75006, France.
Bertrand Daignan-FornierUniversité de Bordeaux, Institut de Biochimie et Génétique Cellulaires, CNRS UMR 5095, Bordeaux cedex, 33077, France.
Anne Olivier-BandiniSanofi R&D, Translational Science Unit, Chilly-Mazarin, 91385, France.
Franck AugéSanofi R&D, Translational Science Unit, Chilly-Mazarin, 91385, France. Electronic address: franck.auge@sanofi.com.
Pierre NiocheUniversité Paris Descartes, Sorbonne Paris Cité, UFR des Sciences Fondamentales et Biomédicales, UMR 1124, Centre Interdisciplinaire Chimie Biologie-Paris, Paris, 75006, France; INSERM, UMR 1124, Paris, 75006, France; Université Paris Descartes, Structural and Molecular Analysis Platform, Paris, 75006, France. Electronic address: pierre.nioche@gmail.com.
Sanofi (France) · FRDélégation Paris 5 · FRCentre National de la Recherche Scientifique · FRCOMSATS University Islamabad · PKHôpital Necker-Enfants Malades · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The reversible adenine phosphoribosyltransferase enzyme (APRT) is essential for purine homeostasis in prokaryotes and eukaryotes. In humans, APRT (hAPRT) is the only enzyme known to produce AMP in cells from dietary adenine. APRT can also process adenine analogs, which are involved in plant development or neuronal homeostasis. However, the molecular mechanism underlying substrate specificity of APRT and catalysis in both directions of the reaction remains poorly understood. Here we present the crystal structures of hAPRT complexed to three cellular nucleotide analogs (hypoxanthine, IMP, and GMP) that we compare with the phosphate-bound enzyme. We established that binding to hAPRT is substrate shape-specific in the forward reaction, whereas it is base-specific in the reverse reaction. Furthermore, a quantum mechanics/molecular mechanics (QM/MM) analysis suggests that the forward reaction is mainly a nucleophilic substitution of type 2 (S

Indexed as

AdenineAdenine PhosphoribosyltransferaseBiocatalysisCrystallography, X-RayHumansKineticsModels, MolecularProtein Structure, TertiaryQuantum TheorySubstrate SpecificityAdenineAdenine Phosphoribosyltransferaseadenineenzyme mechanismforward and reverse reactionshypoxanthinenucleoside monophosphatenucleoside/nucleotide biosynthesisprotein structurepurineQM/MM calculationquantum chemistry

Identifiers

PMID31160323
PMCPMC6690681
OpenAlexW2948860880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.