Evidence map›Paper›PMID 31159736›Full record

ArticleBMC genomics2019

Identification of selection signatures involved in performance traits in a paternal broiler line.

Octávio Augusto Costa Almeida, Gabriel Costa Monteiro Moreira, Fernanda Marcondes Rezende, Clarissa Boschiero, Jane de Oliveira Peixoto, Adriana Mercia Guaratini Ibelli, Mônica Corrêa Ledur, Francisco José de Novais, Luiz Lehmann Coutinho

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  7. Genomic Inbreeding and Runs of Homozygosity Analysis of Cashmere Goat.Animals : an open access journal from MDPI · 2024
    Article
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  16. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Octávio Augusto Costa AlmeidaUniversity of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil.
Gabriel Costa Monteiro MoreiraUniversity of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil.
Fernanda Marcondes RezendeUniversidade Federal de Uberlândia (UFU), Uberlândia, Minas Gerais, Brazil.
Clarissa BoschieroNoble Research Institute, Ardmore, OK, USA.
Jane de Oliveira PeixotoEmbrapa Suínos e Aves, Concórdia, Santa Catarina, Brazil.
Adriana Mercia Guaratini IbelliEmbrapa Suínos e Aves, Concórdia, Santa Catarina, Brazil.
Mônica Corrêa LedurEmbrapa Suínos e Aves, Concórdia, Santa Catarina, Brazil.
Francisco José de NovaisUniversity of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil.
Luiz Lehmann CoutinhoUniversity of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil. llcoutinho@usp.br.ORCID http://orcid.org/0000-0001-9921-214X
Universidade de São Paulo · BRBrazilian Agricultural Research Corporation · BRNoble Research Institute · USUniversidade Federal de Uberlândia · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 153113/2018-9Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 2017/001Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/08704-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/21380-9Fundação de Amparo à Pesquisa do Estado de São Paulo 2016/00569-1
6 · The paper itself

Abstract

backgroundNatural and artificial selection leads to changes in certain regions of the genome resulting in selection signatures that can reveal genes associated with the selected traits. Selection signatures may be identified using different methodologies, of which some are based on detecting contiguous sequences of homozygous identical-by-descent haplotypes, called runs of homozygosity (ROH), or estimating fixation index (F

resultsROH analysis identified homozygous regions of short and moderate size. Analysis of ROH patterns revealed regions commonly shared among animals and changes in ROH abundance and size between the two generations. Results also suggest that whole genome sequencing (WGS) outperforms SNPchip data avoiding overestimation of ROH size and underestimation of ROH number; however, sequencing costs can limited the number of animals analyzed. F

conclusionsIdentification of ROH and F

Indexed as

Genetics, PopulationMultifactorial InheritancePolymorphism, Single NucleotideSelection, GeneticAnimalsChickensFemaleGenomeHomozygoteInbreedingMalePhenotypeArtificial selectionFixation indexFSTGallus gallusRuns of homozygosity

Identifiers

PMID31159736
PMCPMC6547531
OpenAlexW2949020125

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.