Evidence map›Paper›PMID 31155550›Full record

ArticleThe Journal of veterinary medical science2019

Genotyping of swine Mycobacterium avium subsp. hominissuis isolates from Kyushu, Japan.

Mawar Subangkit, Tomoki Yamamoto, Mikiko Ishida, Arisa Nomura, Natsu Yasiki, Putu Eka Sudaryatma, Yoshitaka Goto, Tamaki Okabayashi

Open access · diamondAbstract read
In one paragraph

Article in The Journal of veterinary medical science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. High Molecular Diversity ofInternational journal of molecular sciences · 2025
    Article
  2. Article
  3. Unique genomic sequences in a novelOne health (Amsterdam, Netherlands) · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Mawar SubangkitLaboratory of Veterinary Microbiology, Graduate School of Medicine and Veterinary Medicine, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
Tomoki YamamotoLaboratory of Veterinary Microbiology, Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
Mikiko IshidaLaboratory of Veterinary Microbiology, Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
Arisa NomuraLaboratory of Veterinary Microbiology, Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
Natsu YasikiLaboratory of Veterinary Microbiology, Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
Putu Eka SudaryatmaLaboratory of Veterinary Microbiology, Graduate School of Medicine and Veterinary Medicine, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
Yoshitaka GotoLaboratory of Veterinary Microbiology, Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
Tamaki OkabayashiLaboratory of Veterinary Microbiology, Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, 1-1 Gakuenkibanadai Nishi, Miyazaki, Miyazaki 889-2192, Japan.
University of Miyazaki · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The incidence of diseases caused by nontuberculous mycobacteria (NTM) is increasing annually worldwide, including Japan. Mycobacterium avium subsp. hoiminissuis (MAH) is one of the most common NTM species responsible for chronic lung diseases in animals and humans. In the current study, mycobacterial interspersed repetitive unit-variable number tandem repeat (MIRU-VNTR) typing was employed to characterize the genetic diversity of swine MAH isolates from Kyushu, Japan. In total, 309 isolates were obtained from the lymph nodes of 107 pigs not displaying any clinical signs of disease, of which 307 were identified as MAH, comprising 173 strains. Based on eight established MIRU-VNTR loci, the MAH strains represented 50 genotypes constituting three lineages, and 29 had not been described in the Mac French National Institute for Agricultural Research Nouzilly MIRU-VNTR (Mac-INMV) database. MAH was the dominant M. avium complex (MAC) in pigs from Kyushu, and there was high genetic diversity among genotype profiles of MAH from Kyushu. We identified three predominant genotype profiles in the tested area sharing high relatedness with genotype profiles of strains isolated in European countries. MAH was the most common NTM in pigs from Kyushu and exhibited high diversity, with new strain-derived genotypes.

Indexed as

AnimalsGenetic VariationGenotypeJapanLung DiseasesLymph NodesMinisatellite RepeatsMolecular TypingMycobacterium aviumMycobacterium InfectionsSwineSwine DiseasesgenotypingKyushumycobacterial interspersed repetitive unit-variable number tandem repeat (MIRU-VNTR)Mycobacterium avium subsp. hominissuisnontuberculous mycobacteria

Identifiers

PMID31155550
PMCPMC6715914
OpenAlexW2947760761

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.