Evidence map›Paper›PMID 31155483›Full record

ArticleCell stem cell2019

Lipid Deprivation Induces a Stable, Naive-to-Primed Intermediate State of Pluripotency in Human PSCs.

Daniela Cornacchia, Chao Zhang, Bastian Zimmer, Sun Young Chung, Yujie Fan, Mohamed A Soliman, Jason Tchieu, Stuart M Chambers, Hardik Shah, Daniel Paull and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell stem cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 140 citations in OpenAlex.

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  17. Pluripotent cell states and fates in human embryo models.Development (Cambridge, England) · 2025
    Review
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Daniela CornacchiaDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Chao ZhangInstitute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10021, USA; Division of Hematology/Oncology, Department of Medicine, Weill Cornell Medicine, New York, NY 10021, USA.
Bastian ZimmerDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Sun Young ChungDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Yujie FanDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Weill Graduate School of Medical Sciences of Cornell University, New York, NY 10065, USA.
Mohamed A SolimanDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Weill Cornell Medicine, New York, NY 10065, USA.
Jason TchieuDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Stuart M ChambersDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Hardik ShahDonald B. and Catherine C. Marron Cancer Metabolism Center, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Daniel PaullThe New York Stem Cell Foundation Research Institute, New York, NY 10019, USA.
Csaba KonradFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10065, USA.
Michelle VincendeauDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Scott A NoggleThe New York Stem Cell Foundation Research Institute, New York, NY 10019, USA.
Giovanni ManfrediFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10065, USA.
Lydia W S FinleyCenter for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Cell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Justin R CrossDonald B. and Catherine C. Marron Cancer Metabolism Center, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Doron BetelInstitute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10021, USA; Division of Hematology/Oncology, Department of Medicine, Weill Cornell Medicine, New York, NY 10021, USA.
Lorenz StuderDevelopmental Biology, The Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address: studerl@mskcc.org.
Memorial Sloan Kettering Cancer Center · USCornell University · USNew York Stem Cell Foundation · USWeill Cornell Medicine · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Novel strategies for induction of aging in human PSC-derived lineages for modeling Alzheimer's DiseaseR01AG054720 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI Doron Betel, LORENZ P. STUDER · 2017 to 2026
$4.5M
NCI NIH HHS P30 CA008748NIA NIH HHS R01 AG054720
6 · The paper itself

Abstract

Current challenges in capturing naive human pluripotent stem cells (hPSCs) suggest that the factors regulating human naive versus primed pluripotency remain incompletely defined. Here we demonstrate that the widely used Essential 8 minimal medium (E8) captures hPSCs at a naive-to-primed intermediate state of pluripotency expressing several naive-like developmental, bioenergetic, and epigenomic features despite providing primed-state-sustaining growth factor conditions. Transcriptionally, E8 hPSCs are marked by activated lipid biosynthesis and suppressed MAPK/TGF-β gene expression, resulting in endogenous ERK inhibition. These features are dependent on lipid-free culture conditions and are lost upon lipid exposure, whereas short-term pharmacological ERK inhibition restores naive-to-primed intermediate traits even in the presence of lipids. Finally, we identify de novo lipogenesis as a common transcriptional signature of E8 hPSCs and the pre-implantation human epiblast in vivo. These findings implicate exogenous lipid availability in regulating human pluripotency and define E8 hPSCs as a stable, naive-to-primed intermediate (NPI) pluripotent state.

Indexed as

BlastocystCell DifferentiationCells, CulturedCulture Media, Serum-FreeEmbryonic Stem CellsExtracellular Signal-Regulated MAP KinasesGerm LayersHumansLipid MetabolismPluripotent Stem CellsSignal TransductionTransforming Growth Factor betaCulture Media, Serum-FreeExtracellular Signal-Regulated MAP KinasesTransforming Growth Factor betadifferential human pluripotent statesendogenous ERK inhibitionlipid metabolismmetabolic regulation of cell identitymetabolism and epigeneticsmetabolism and pluripotencynaive-to-primed intermediate pluripotencypluripotency regulation through lipids

Identifiers

PMID31155483
PMCPMC7549840
OpenAlexW2946899078

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.