Evidence map›Paper›PMID 31151479›Full record

ArticleBMC research notes2019

Transcriptome sequencing of Festulolium accessions under salt stress.

A Teshome, S L Byrne, T Didion, J De Vega, C S Jensen, M Klaas, S Barth

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Transcriptome Analysis of the Salt-TreatedCurrent issues in molecular biology · 2023
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

A TeshomeTeagasc Crop Science Department, Oak Park, Carlow, R93XE12, Ireland.
S L ByrneTeagasc Crop Science Department, Oak Park, Carlow, R93XE12, Ireland.
T DidionDLF, Research Division, Store Heddinge, Denmark.
J De VegaEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
C S JensenDLF, Research Division, Store Heddinge, Denmark.
M KlaasTeagasc Crop Science Department, Oak Park, Carlow, R93XE12, Ireland.
S BarthTeagasc Crop Science Department, Oak Park, Carlow, R93XE12, Ireland. susanne.barth@teagasc.ie.ORCID http://orcid.org/0000-0002-4104-5964
Teagasc - The Irish Agriculture and Food Development Authority · IENorwich Research Park · GB

Funding

Seventh Framework Programme FP7-KBBE-2011-5-289461
6 · The paper itself

Abstract

objectivesThe objective of this study was to establish transcriptome assemblies of Festulolium hybrids under salt stress, and identify genes regulated across the hybrids in response to salt stress. The development of transcriptome assemblies for Festulolium hybrids and cataloguing of genes regulated under salt stress will facilitate further downstream studies.

resultsPlants were grown at three salt concentrations (0.5%, 1% and 1.5%) and phenotypic and transcriptomic data was collected. Salt stress was confirmed by progressive loss of green leaves as salt concentration increased from 0 to 1.5%. We generated de-novo transcriptome assemblies for two Festulolium pabulare festucoid genotypes, for a single Festulolium braunii genotype, and a single F. pabulare loloid genotype. We also identified 1555 transcripts that were up regulated and 1264 transcripts that were down regulated in response to salt stress in the Festulolium hybrids. Some of the identified transcripts showed significant sequence similarity with genes known to be regulated during salt and other abiotic stresses.

Indexed as

Gene Expression Regulation, PlantTranscriptomeFestucaGene Expression ProfilingGenes, PlantHigh-Throughput Nucleotide SequencingHybridization, GeneticLoliumPlant LeavesSalt StressTranscription, GeneticFestuloliumSalt toleranceTranscriptome

Identifiers

PMID31151479
PMCPMC6545024
OpenAlexW2947549470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.