Evidence map›Paper›PMID 31151421›Full record

ArticleBMC infectious diseases2019

Laboratory characterisation of Salmonella enterica serotype Typhi isolates from Zimbabwe, 2009-2017.

Tapfumanei Mashe, Muchaneta Gudza-Mugabe, Andrew Tarupiwa, Ellen Munemo, Sekesai Mtapuri-Zinyowera, Shannon L Smouse, Arvinda Sooka, Babill Stray-Pedersen, Anthony M Smith, Joshua Mbanga

Abstract read
In one paragraph

Article in BMC infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Clinical profiles and antimicrobial resistance patterns of invasive Salmonella infections in children in China.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2022
    Article
  6. Article
  7. Review
  8. The Burden of Typhoid Fever in Sub-Saharan Africa: A Perspective.Research and reports in tropical medicine · 2022
    Review
  9. Article
  10. Enteric fever.BMJ (Clinical research ed.) · 2021
    Article
  11. Article
  12. The Invisible Burden: Diagnosing and Combatting Typhoid Fever in Asia and Africa.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tapfumanei MasheDepartment of Applied Biology and Biochemistry, National University of Science and Technology, Bulawayo, Zimbabwe. mashet2006@yahoo.co.uk.ORCID http://orcid.org/0000-0001-6481-4095
Muchaneta Gudza-MugabeNational Microbiology Reference Laboratory, Harare, Zimbabwe.
Andrew TarupiwaNational Microbiology Reference Laboratory, Harare, Zimbabwe.
Ellen MunemoNational Microbiology Reference Laboratory, Harare, Zimbabwe.
Sekesai Mtapuri-ZinyoweraNational Microbiology Reference Laboratory, Harare, Zimbabwe.
Shannon L SmouseCentre for Enteric Diseases, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
Arvinda SookaCentre for Enteric Diseases, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
Babill Stray-PedersenDivision of Women, Rikshospitalet, Oslo University Hospital and Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Anthony M SmithCentre for Enteric Diseases, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
Joshua MbangaDepartment of Applied Biology and Biochemistry, National University of Science and Technology, Bulawayo, Zimbabwe.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTyphoid fever remains a major public health problem in Zimbabwe with recurrent outbreaks reported since 2009. To provide guidance on appropriate treatment choice in order to minimise the morbidity and mortality of typhoid fever and prevent large scale outbreaks, we investigated the antimicrobial susceptibility patterns, prevalence of Salmonella enterica serotype Typhi (S. Typhi) H58 haplotype and molecular subtypes of S. Typhi from outbreak strains isolated from 2009 to 2017 in Zimbabwe and compared these to isolates from neighbouring African countries.

methodsAntimicrobial susceptibility testing was performed on all isolates using the disk diffusion, and E-Test, and results were interpreted using Clinical and Laboratory Standards Institute (CLSI) guidelines (2017). S. Typhi H58 haplotype screening was performed on 161 (58.3%) isolates. Pulsed-field gel electrophoresis (PFGE) was performed on 91 selected isolates across timelines using antibiotic susceptibility results and geographical distribution (2009 to 2016).

resultsBetween 2009 and 2017, 16,398 suspected cases and 550 confirmed cases of typhoid fever were notified in Zimbabwe. A total of 276 (44.6%) of the culture-confirmed S. Typhi isolates were analysed and 243 isolates (88.0%) were resistant to two or more first line drugs (ciprofloxacin, ampicillin and chloramphenicol) for typhoid. The most common resistance was to ampicillin-chloramphenicol (172 isolates; 62.3%). Increasing ciprofloxacin resistance was observed from 2012 to 2017 (4.2 to 22.0%). Out of 161 screened isolates, 150 (93.2%) were haplotype H58. Twelve PFGE patterns were observed among the 91 isolates analysed, suggesting some diversity exists among strains circulating in Zimbabwe. PFGE analysis of 2013, 2014 and 2016 isolates revealed a common strain with an indistinguishable PFGE pattern (100% similarity) and indistinguishable from PFGE patterns previously identified in strains isolated from South Africa, Zambia and Tanzania.

conclusionsResistance to first line antimicrobials used for typhoid fever is emerging in Zimbabwe and the multidrug resistant S. Typhi H58 haplotype is widespread. A predominant PFGE clone circulating in Zimbabwe, South Africa, Zambia and Tanzania, argues for cross-border cooperation in the control of this disease.

Indexed as

AmpicillinAnti-Bacterial AgentsChloramphenicolCiprofloxacinClinical Laboratory TechniquesDisease OutbreaksDrug Resistance, MicrobialElectrophoresis, Gel, Pulsed-FieldFemaleHaplotypesHumansLaboratoriesMicrobial Sensitivity TestsMolecular EpidemiologySalmonella entericaSalmonella typhiAmpicillinAnti-Bacterial AgentsChloramphenicolCiprofloxacinAntimicrobial resistanceMolecular epidemiologyMolecular sub-typingPFGESalmonella TyphiZimbabwe

Identifiers

PMID31151421
PMCPMC6544939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.