Evidence map›Paper›PMID 31147608›Full record

ArticleScientific reports2019

Structural and biochemical characterization of Rv0187, an O-methyltransferase from Mycobacterium tuberculosis.

Sanghyun Lee, Jihoon Kang, Jungwook Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 29 citations in OpenAlex.

  1. Oestrogen Detoxification Ability of White Rot FungusJournal of fungi (Basel, Switzerland) · 2024
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  4. Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid.Protein science : a publication of the Protein Society · 2022
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sanghyun LeeDepartment of Chemistry, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Jihoon KangDepartment of Chemistry, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Jungwook KimDepartment of Chemistry, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea. jwkim@gist.ac.kr.ORCID http://orcid.org/0000-0001-5213-9299
Gwangju Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Catechol O-methyltransferase (COMT) is widely distributed in nature and installs a methyl group onto one of the vicinal hydroxyl groups of a catechol derivative. Enzymes belonging to this family require two cofactors for methyl transfer: S-adenosyl-l-methionine as a methyl donor and a divalent metal cation for regiospecific binding and activation of a substrate. We have determined two high-resolution crystal structures of Rv0187, one of three COMT paralogs from Mycobacterium tuberculosis, in the presence and absence of cofactors. The cofactor-bound structure clearly locates strontium ions and S-adenosyl-l-homocysteine in the active site, and together with the complementary structure of the ligand-free form, it suggests conformational dynamics induced by the binding of cofactors. Examination of in vitro activities revealed promiscuous substrate specificity and relaxed regioselectivity against various catechol-like compounds. Unexpectedly, mutation of the proposed catalytic lysine residue did not abolish activity but altered the overall landscape of regiospecific methylation.

Indexed as

Bacterial ProteinsCatalytic DomainCatechol O-MethyltransferaseCoenzymesCrystallography, X-RayEnzyme AssaysLysineMethylationModels, MolecularMutationMycobacterium tuberculosisRecombinant ProteinsS-AdenosylhomocysteineStrontiumSubstrate SpecificityBacterial ProteinsCatechol O-MethyltransferaseCoenzymesLysineRecombinant ProteinsS-AdenosylhomocysteineStrontium

Identifiers

PMID31147608
PMCPMC6543040
OpenAlexW2946987390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.