ArticleJournal of experimental botany2019
Dissecting the genome-wide genetic variants of milling and appearance quality traits in rice.
Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- OsMYB99 Modulates Grain Wax Biosynthesis and Redox Homeostasis to Control Head Rice Yield and Chalkiness.Plant biotechnology journal · 2026Article
- Geographic Divergence and Putative Candidate Gene Discovery of Rice Grain Quality in China.Rice (New York, N.Y.) · 2025Article
- Identification and Candidate Gene Analysis of qCTS11-TK9, a Novel Major Quantitative Trait Locus Associated with Chilling Tolerance in Rice Seedlings.Rice (New York, N.Y.) · 2025Article
- Natural variation of an E3 ubiquitin ligase encoding gene Chalk9 regulates grain chalkiness in rice.Nature communications · 2025Article
- RNA-seq Analysis of the Mechanisms Underlying Chalky Grain and Characterization of Two IAA Receptor Proteins OsAFB3 and OsAFB5 in Chalkiness Formation in Oryza sativa.Rice (New York, N.Y.) · 2025Article
- The LCG1-OsBP5/OsEBP89-Wx module regulates the grain chalkiness and taste quality in rice.Plant biotechnology journal · 2025Article
- The elite eating quality alleles WxPlant biotechnology journal · 2024Article
- Genome-wide association mapping of quantitative trait loci for chalkiness-related traits in rice (Frontiers in genetics · 2024Article
- Article
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress.Scientific reports · 2023Article
- Multi-model genome-wide association studies for appearance quality in rice.Frontiers in plant science · 2023Article
- Genetic architecture of head rice and rice chalky grain percentages using genome-wide association studies.Frontiers in plant science · 2023Article
- A mitochondrion-associated PPR protein, WBG1, regulates grain chalkiness in rice.Frontiers in plant science · 2023Article
- Waxy is an important factor for grain fissure resistance and head rice yield as revealed by a genome-wide association study.Journal of experimental botany · 2022Article
- Low Light Stress Increases Chalkiness by Disturbing Starch Synthesis and Grain Filling of Rice.International journal of molecular sciences · 2022Article
- Genome-wide association study and genomic prediction for yield and grain quality traits of hybrid rice.Molecular breeding : new strategies in plant improvement · 2022Article
- Genome-wide association study reveals novel genomic regions governing agronomic and grain quality traits and superior allelic combinations for Basmati rice improvement.Frontiers in plant science · 2022Article
- Fine Mapping of Two Major Quantitative Trait Loci for Rice Chalkiness With High Temperature-Enhanced Additive Effects.Frontiers in plant science · 2022Article
- RiceFrontiers in plant science · 2022Article
- Genome-Wide Association Mapping Reveals Novel Putative Gene Candidates Governing Reproductive Stage Heat Stress Tolerance in Rice.Frontiers in genetics · 2022Article
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Higher head rice yield (HRY), which represents the proportion of intact grains that survive milling, and lower grain chalkiness (opacity) are key quality traits. We investigated the genetic basis of HRY and chalkiness in 320 diverse resequenced accessions of indica rice with integrated single- and multi-locus genome-wide association studies using 2.26 million single-nucleotide polymorphisms. We identified novel haplotypes that underly higher HRY on chromosomes 3, 6, 8, and 11, and that lower grain chalkiness in a fine-mapped region on chromosome 5. Whole-genome sequencing of 92 IRRI breeding lines was performed to identify the genetic variants of HRY and chalkiness. Rare and novel haplotypes were found for lowering chalkiness, but missing alleles hindered progress towards enhancing HRY in breeding material. The novel haplotypes that we identified have potential use in breeding programs aimed at improving these important traits in the rice crop.
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