Evidence map›Paper›PMID 31145783›Full record

ArticleJournal of experimental botany2019

miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes.

Varsha Tirumalai, Chenna Swetha, Ashwin Nair, Awadhesh Pandit, Padubidri V Shivaprasad

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 223 citations in OpenAlex.

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  20. cDNA Cloning, Bioinformatics, and Expression Analysis ofInternational journal of molecular sciences · 2025
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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Varsha TirumalaiNational Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bangalore, India.
Chenna SwethaNational Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bangalore, India.
Ashwin NairNational Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bangalore, India.
Awadhesh PanditNational Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bangalore, India.
Padubidri V ShivaprasadNational Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bangalore, India.
Tata Institute of Fundamental Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs are a class of non-coding small RNAs involved in the negative regulation of gene expression, which play critical roles in developmental and metabolic pathways. Studies in several plants have identified a few microRNAs and other small RNAs that target regulators of the phenylpropanoid metabolic pathway called the MYB transcription factors. However, it is not well understood how sRNA-mediated regulation of MYBs influences the accumulation of specific secondary metabolites. Using sRNA sequencing, degradome analysis, mRNA sequencing, and proteomic analysis, we establish that grape lines with high anthocyanin content express two MYB-targeting microRNAs abundantly, resulting in the differential expression of specific MYB proteins. miR828 and miR858 target coding sequences of specific helix motifs in the mRNA sequences of MYB proteins. Targeting by miR828 caused MYB RNA decay and the production of a cascade of secondary siRNAs that depend on RNA-dependent RNA polymerase 6. MYB suppression and cascade silencing was more robust in grape lines with high anthocyanin content than in a flavonol-rich grape line. We establish that microRNA-mediated silencing targeted the repressor class of MYBs to promote anthocyanin biosynthesis in grape lines with high anthocyanins. We propose that this process regulates the expression of appropriate MYBs in grape lines to produce specific secondary metabolites.

Indexed as

AnthocyaninsFlavonolsMicroRNAsPlant ProteinsRNA, PlantTranscription FactorsVitisAnthocyaninsFlavonolsMicroRNAsPlant ProteinsRNA, PlantTranscription FactorsAnthocyaninsflavonolsgrapesmiRNAR2R3 MYBsecondary silencing

Identifiers

PMID31145783
PMCPMC6760283
OpenAlexW2947287132

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.