Evidence map›Paper›PMID 31145594›Full record

ArticleBiochemistry2019

A Central Region of NF-κB Essential Modulator Is Required for IKKβ-Induced Conformational Change and for Signal Propagation.

Robert Shaffer, Anthony M DeMaria, Larisa Kagermazova, Yuekun Liu, Milad Babaei, Suhaily Caban-Penix, Arisdelsy Cervantes, Stefan Jehle, Lee Makowski, Thomas D Gilmore and 2 more

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Robert Shaffer
Anthony M DeMaria
Larisa Kagermazova
Yuekun Liu
Milad Babaei
Suhaily Caban-Penix
Arisdelsy Cervantes
Stefan Jehle
Lee MakowskiDepartment of Bioengineering , Northeastern University , Boston , Massachusetts 02115 , United States.
Thomas D Gilmore
Boston University · USNortheastern University · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Molecular Mechanism of the NFkappaB Essential Modulator (NEMO) Scaffold Protein Mutated in Human ImmunodeficienciesR01GM117350 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI WHITTY, ADRIAN · 2016 to 2019
$1.5M
NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM117350
6 · The paper itself

Abstract

NF-κB essential modulator (NEMO) regulates NF-κB signaling by acting as a scaffold for the kinase IKKβ to direct its activity toward the NF-κB inhibitor, IκBα. Here, we show that a highly conserved central region of NEMO termed the intervening domain (IVD, amino acids 112-195) plays a key role in NEMO function. We determined a structural model of full-length NEMO by small-angle X-ray scattering and show that full-length, wild-type NEMO becomes more compact upon binding of a peptide comprising the NEMO binding domain of IKKβ (amino acids 701-745). Mutation of conserved IVD residues (9SG-NEMO) disrupts this conformational change in NEMO and abolishes the ability of NEMO to propagate NF-κB signaling in cells, although the affinity of 9SG-NEMO for IKKβ compared to that of the wild type is unchanged. On the basis of these results, we propose a model in which the IVD is required for a conformational change in NEMO that is necessary for its ability to direct phosphorylation of IκBα by IKKβ. Our findings suggest a molecular explanation for certain disease-associated mutations within the IVD and provide insight into the role of conformational change in signaling scaffold proteins.

Indexed as

Amino Acid SequenceAnimalsHEK293 CellsHumansI-kappa B KinaseModels, MolecularProtein ConformationProtein DomainsProtein MultimerizationScattering, Small AngleSequence AlignmentSignal TransductionX-Ray DiffractionI-kappa B KinaseIKBKG protein, human

Identifiers

PMID31145594
PMCPMC9295417
OpenAlexW2946855694

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.