Evidence map›Paper›PMID 31144574›Full record

ArticleEpigenetics2019

Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome.

Yahan Li, Darren Erich Hagen, Tieming Ji, Mohammad Reza Bakhtiarizadeh, Whitney M Frederic, Emily M Traxler, Jennifer M Kalish, Rocío Melissa Rivera

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Livestock species as emerging models for genomic imprinting.Frontiers in cell and developmental biology · 2024
    Review
  5. Catechin versus MoSInternational journal of molecular sciences · 2023
    Article
  6. Early embryonic lethality of mice lacking POLD2.Molecular reproduction and development · 2023
    Article
  7. Epigenetic Reprogramming and Somatic Cell Nuclear Transfer.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Yahan Lia Division of Animal Sciences, University of Missouri , Columbia , MO , USA.ORCID 0000-0003-3062-4626
Darren Erich Hagenb Department of Animal and Food Science, Oklahoma State University , Stillwater , OK , USA.ORCID 0000-0001-8295-020X
Tieming Jic Department of Statistics, University of Missouri , Columbia , MO , USA.ORCID 0000-0002-1915-5892
Mohammad Reza Bakhtiarizadehd Department of Animal and Poultry Science, College of Aburaihan, University of Tehran , Tehran , Iran.ORCID 0000-0001-5336-6987
Whitney M Frederice Division of Human Genetics, Center for Childhood Cancer Research, The Children's Hospital of Philadelphia , Philadelphia , PA , USA.ORCID 0000-0002-0683-4415
Emily M Traxlere Division of Human Genetics, Center for Childhood Cancer Research, The Children's Hospital of Philadelphia , Philadelphia , PA , USA.ORCID 0000-0003-2603-2097
Jennifer M Kalishe Division of Human Genetics, Center for Childhood Cancer Research, The Children's Hospital of Philadelphia , Philadelphia , PA , USA.ORCID 0000-0003-1500-9713
Rocío Melissa Riveraa Division of Animal Sciences, University of Missouri , Columbia , MO , USA.ORCID 0000-0002-9832-9618
Children's Hospital of Philadelphia · USUniversity of Missouri · USOklahoma State University · USUniversity of Tehran · IR

Funding

The Mechanism of Tumor Formation in Beckwith-Wiedemann SyndromeK08CA193915 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI KALISH, JENNIFER MELISSA · 2015 to 2019
$703k
Establishment of a phenotypical model of adverse outcomes associated with ARTR21HD062920 · NICHD · UNIVERSITY OF MISSOURI-COLUMBIA · PI RIVERA, ROCIO MELISSA, WELLS, KEVIN DALE · 2010 to 2011
$364k
NCI NIH HHS K08 CA193915NICHD NIH HHS R21 HD062920
6 · The paper itself

Abstract

The use of assisted reproductive technologies (ART) can induce a congenital overgrowth condition in humans and ruminants, namely Beckwith-Wiedemann syndrome (BWS) and large offspring syndrome (LOS), respectively. Shared phenotypes and epigenotypes have been found between BWS and LOS. We have observed global misregulation of transcripts in bovine foetuses with LOS. microRNAs (miRNAs) are important post-transcriptional gene expression regulators. We hypothesize that there is miRNA misregulation in LOS and that this misregulation is shared with BWS. In this study, small RNA sequencing was conducted to investigate miRNA expression profiles in bovine and human samples. We detected 407 abundant known miRNAs and predicted 196 putative miRNAs from the bovine sequencing results and identified 505 abundant miRNAs in human tongue. Differentially expressed miRNAs (DE-miRNAs) were identified between control and LOS groups in all tissues analysed as well as between BWS and control human samples. DE-miRNAs were detected from several miRNA clusters including DLK1-DIO3 genomic imprinted cluster in LOS and BWS. DNA hypermethylation was associated with downregulation of miRNAs in the DLK1-DIO3. mRNA targets of the DE-miRNAs were predicted and signalling pathways associated with control of organ size (including the Hippo signalling pathway), cell proliferation, apoptosis, cell survival, cell cycle, and cell adhesion were found to be enriched with these genes. Yes associated protein 1 (YAP1) is the core effector of the Hippo signalling pathway, and increased level of active (non-phosphorylated) YAP1 protein was detected in skeletal muscle of LOS foetuses. Overall, our data provide evidence of miRNA misregulation in LOS and BWS.

Indexed as

DNA MethylationAnimalsBeckwith-Wiedemann SyndromeCattleCattle DiseasesDown-RegulationFemaleGene Expression ProfilingGene Regulatory NetworksGenomic ImprintingHumansMaleMicroRNAsReproductive Techniques, AssistedSequence Analysis, RNAMicroRNAsassisted reproductive technologiesBeckwith-Wiedemann syndromebovine foetusDLK1-DIO3DNA methylationHippo signalling pathwayimprinted miRNA clusterlarge offspring syndromemicroRNAYAP1

Identifiers

PMID31144574
PMCPMC6691986
OpenAlexW2947010952

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.