Evidence map›Paper›PMID 31144047›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2019

Integrated metabolomics identifies CYP72A67 and CYP72A68 oxidases in the biosynthesis of Medicago truncatula oleanate sapogenins.

Vered Tzin, John H Snyder, Dong Sik Yang, David V Huhman, Bonnie S Watson, Stacy N Allen, Yuhong Tang, Karel Miettinen, Philipp Arendt, Jacob Pollier and 2 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 44 citations in OpenAlex.

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  12. Biological Activities and Chemistry of Triterpene Saponins fromEvidence-based complementary and alternative medicine : eCAM · 2021
    Article
  13. CRISPR/Cas9-Mediated Targeted Mutagenesis ofFrontiers in plant science · 2021
    Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 5 countries.

Vered TzinPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA. vtzin@bgu.ac.il.
John H SnyderPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA.
Dong Sik YangPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA.
David V HuhmanPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA.
Bonnie S WatsonPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA.
Stacy N AllenPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA.
Yuhong TangPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA.
Karel MiettinenDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.
Philipp ArendtDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.
Jacob PollierDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.
Alain GoossensDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.
Lloyd W SumnerPlant Biology Division, Noble Research Institute, Ardmore, OKLA, 73401, USA. sumnerlw@missouri.edu.ORCID 0000-0002-4086-663X
Noble Research Institute · USGhent University · BEBen-Gurion University of the Negev · ILCornell University · USSamsung (South Korea) · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionTriterpene saponins are important bioactive plant natural products found in many plant families including the Leguminosae.

objectivesWe characterize two Medicago truncatula cytochrome P450 enzymes, MtCYP72A67 and MtCYP72A68, involved in saponin biosynthesis including both in vitro and in planta evidence.

methodsUHPLC-(-)ESI-QToF-MS was used to profile saponin accumulation across a collection of 106 M. truncatula ecotypes. The profiling results identified numerous ecotypes with high and low saponin accumulation in root and aerial tissues. Four ecotypes with significant differential saponin content in the root and/or aerial tissues were selected, and correlated gene expression profiling was performed.

resultsCorrelation analyses between gene expression and saponin accumulation revealed high correlations between saponin content with gene expression of β-amyrin synthase, MtCYP716A12, and two cytochromes P450 genes, MtCYP72A67 and MtCYP72A68. In vivo and in vitro biochemical assays using yeast microsomes containing MtCYP72A67 revealed hydroxylase activity for carbon 2 of oleanolic acid and hederagenin. This finding was supported by functional characterization of MtCYP72A67 using RNAi-mediated gene silencing in M. truncatula hairy roots, which revealed a significant reduction of 2β-hydroxylated sapogenins. In vivo and in vitro assays with MtCYP72A68 produced in yeast showed multifunctional oxidase activity for carbon 23 of oleanolic acid and hederagenin. These findings were supported by overexpression of MtCYP72A68 in M. truncatula hairy roots, which revealed significant increases of oleanolic acid, 2β-hydroxyoleanolic acid, hederagenin and total saponin levels.

conclusionsThe cumulative data support that MtCYP72A68 is a multisubstrate, multifunctional oxidase and MtCYP72A67 is a 2β-hydroxylase, both of which function during the early steps of triterpene-oleanate sapogenin biosynthesis.

Indexed as

Biosynthetic PathwaysChromatography, High Pressure LiquidCytochrome P-450 Enzyme SystemGene Expression ProfilingGene Expression Regulation, PlantMedicago truncatulaMetabolomicsPlant ProteinsSapogeninsSpectrometry, Mass, Electrospray IonizationCytochrome P-450 Enzyme SystemPlant ProteinsSapogeninsCYP72A67CYP72A68Cytochrome P450Integrated metabolomicsMedicago truncatulaSapogeninSaponin

Identifiers

PMID31144047
OpenAlexW2947721315

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.