Evidence map›Paper›PMID 31143927›Full record

ArticleNucleic acids research2019

PRECOG: PREdicting COupling probabilities of G-protein coupled receptors.

Gurdeep Singh, Asuka Inoue, J Silvio Gutkind, Robert B Russell, Francesco Raimondi

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. The landscape of cancer rewired GPCR signaling axes.bioRxiv : the preprint server for biology · 2023
    Article
  6. Chemogenetic activation of GSignal transduction and targeted therapy · 2023
    Article
  7. The GPCR-GαNature immunology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Agonist-Dependent Coupling of the Promiscuous Adenosine AACS pharmacology & translational science · 2022
    Article
  13. The G protein database, GproteinDb.Nucleic acids research · 2022
    Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Gurdeep SinghCellNetworks, Bioquant, Heidelberg University, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany.
Asuka InoueGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai, Miyagi 980-8578, Japan.
J Silvio GutkindDepartment of Pharmacology and Moores Cancer Center, University of California, San Diego, La Jolla, CA 92093, USA.
Robert B RussellCellNetworks, Bioquant, Heidelberg University, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany.
Francesco RaimondiCellNetworks, Bioquant, Heidelberg University, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany.
Heidelberg University · DETohoku University · JPUniversity of California, San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

G-protein coupled receptors (GPCRs) control multiple physiological states by transducing a multitude of extracellular stimuli into the cell via coupling to intra-cellular heterotrimeric G-proteins. Deciphering which G-proteins couple to each of the hundreds of GPCRs present in a typical eukaryotic organism is therefore critical to understand signalling. Here, we present PRECOG (precog.russelllab.org): a web-server for predicting GPCR coupling, which allows users to: (i) predict coupling probabilities for GPCRs to individual G-proteins instead of subfamilies; (ii) visually inspect the protein sequence and structural features that are responsible for a particular coupling; (iii) suggest mutations to rationally design artificial GPCRs with new coupling properties based on predetermined coupling features.

Indexed as

SoftwareAmino Acid SequenceAnimalsBinding SitesGTP-Binding ProteinsHumansInternetModels, MolecularMutationProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein EngineeringProtein Interaction Domains and MotifsReceptors, G-Protein-CoupledRecombinant Fusion ProteinsGTP-Binding ProteinsReceptors, G-Protein-CoupledRecombinant Fusion Proteins

Identifiers

PMID31143927
PMCPMC6602504
OpenAlexW2946888689

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.