Evidence map›Paper›PMID 31143879›Full record

ArticleEClinicalMedicine2019

Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence Analysis.

Benjamin Chimukangara, Richard J Lessells, Soo-Yon Rhee, Jennifer Giandhari, Ayesha B M Kharsany, Kogieleum Naidoo, Lara Lewis, Cherie Cawood, David Khanyile, Kassahun A Ayalew and 21 more

Abstract read
In one paragraph

Article in EClinicalMedicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Benjamin ChimukangaraKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Richard J LessellsKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Soo-Yon RheeDepartment of Medicine, Stanford University, Stanford, CA, United States of America.
Jennifer GiandhariKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Ayesha B M KharsanyCentre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Kogieleum NaidooCentre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Lara LewisCentre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Cherie CawoodEpicentre AIDS Risk Management (Pty) Limited, PO Box 3484, Paarl, Cape Town, South Africa.
David KhanyileEpicentre AIDS Risk Management (Pty) Limited, PO Box 3484, Paarl, Cape Town, South Africa.
Kassahun A AyalewCenters for Disease Control and Prevention, Pretoria, South Africa.
Karidia DialloCenters for Disease Control and Prevention, Pretoria, South Africa.
Reshmi SamuelDepartment of Virology, National Health Laboratory Service, University of KwaZulu-Natal, Durban, South Africa.
Gillian HuntCentre for HIV and STIs, National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.
Alain VandormaelKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Babill Stray-PedersenInstitute of Clinical Medicine, University of Oslo, Oslo University Hospital, Oslo, Norway.
Michelle GordonKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Tariro MakadzangeRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard, Cambridge, MA, United States of America.
Photini KiepielaHIV Prevention Research Unit, Medical Research Council, Durban, South Africa.
Gita RamjeeHIV Prevention Research Unit, Medical Research Council, Durban, South Africa.
Johanna LedwabaCentre for HIV and STIs, National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.
Monalisa KalimasheCentre for HIV and STIs, National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.
Lynn MorrisCentre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Urvi M ParikhDepartment of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States of America.
John W MellorsDepartment of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States of America.
Robert W ShaferDepartment of Medicine, Stanford University, Stanford, CA, United States of America.
David KatzensteinDepartment of Medicine, Stanford University, Stanford, CA, United States of America.
Pravi MoodleyDepartment of Virology, National Health Laboratory Service, University of KwaZulu-Natal, Durban, South Africa.
Ravindra K GuptaDepartment of Infection, University College London, United Kingdom of Great Britain and Northern Ireland.
Deenan PillayDepartment of Infection, University College London, United Kingdom of Great Britain and Northern Ireland.
Salim S Abdool KarimCentre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Tulio de OliveiraKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.

Funding

HIV Drug Resistance DatabaseR24AI136618 · NIAID · STANFORD UNIVERSITY · PI ROBERT William SHAFER · 2018 to 2026
$7.3M
Identifying sources of HIV infection in adolescent girls in rural South AfricaR01HD083343 · NICHD · CENTRE/AIDS PROGRAMME/RES/SOUTH AFRICA · PI KHARSANY, AYESHA BM, KOHLER, HANS-PETER · 2015 to 2019
$1.7M
NIAID NIH HHS R24 AI136618
6 · The paper itself

Abstract

backgroundSouth Africa has the largest public antiretroviral therapy (ART) programme in the world. We assessed temporal trends in pretreatment HIV-1 drug resistance (PDR) in ART-naïve adults from South Africa.

methodsWe included datasets from studies conducted between 2000 and 2016, with HIV-1

findingsWe identified 38 datasets, and retrieved 6880 HIV-1

interpretationIncreasing PDR in South Africa presents a threat to the efforts to end the HIV/AIDS epidemic. These findings support the recent decision to modify the standard first-line ART regimen, but also highlights the need for broader public health action to prevent the further emergence and transmission of drug-resistant HIV. SOURCE OF

fundingThis research project was funded by the South African Medical Research Council (MRC) with funds from National Treasury under its Economic Competitiveness and Support Package. DISCLAIMER: The contents of this publication are solely the responsibility of the authors and do not necessarily represent the official views of CDC.

Indexed as

Antiretroviral therapyHIVMolecular epidemiologyPooled sequence analysisPre-treatment drug resistanceSouth AfricaSurveillance

Identifiers

PMID31143879
PMCPMC6510720

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.