ArticleFrontiers in microbiology2019
Comparative Analysis of Tools and Approaches for Source Tracking
Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
38 citing papers in PubMed.
- Biofilm forming capacity, sanitizer tolerance, and genetic characterization of persistent and non-persistentBiofilm · 2026Article
- Occurrence, Species Distribution, and Antimicrobial Resistance ofMicroorganisms · 2026Article
- Listeriosis.Nature reviews. Disease primers · 2025Review
- Retrospective Analysis of Historical Listeria monocytogenes Clinical Isolates, New York, USA, 2000-2021Emerging infectious diseases · 2025Review
- Validation of Core and Whole-Genome Multi-Locus Sequence Typing Schemes for Shiga-Toxin-ProducingMicroorganisms · 2025Article
- A Comprehensive Methodology for Microbial Strain Typing Using Fourier-Transform Infrared Spectroscopy.Methods and protocols · 2024Article
- Exploring the occurrence ofFrontiers in microbiology · 2024Article
- MIST: A microbial identification and source tracking system for next-generation sequencing data.iMeta · 2023Article
- Review
- Efflux Pumps and Different Genetic Contexts ofInternational journal of molecular sciences · 2023Article
- Evaluation of whole and core genome multilocus sequence typing allele schemes forFrontiers in microbiology · 2023Article
- Whole-Genome Sequencing-Based Characterization ofApplied and environmental microbiology · 2022Article
- PervasiveApplied and environmental microbiology · 2022Review
- Review
- Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing.Nature communications · 2022Article
- A Machine Learning Model for Food Source Attribution ofPathogens (Basel, Switzerland) · 2022Article
- In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes.BMC genomics · 2022Article
- Whole-Genome Sequencing Analysis of Listeria monocytogenes from Rural, Urban, and Farm Environments in Norway: Genetic Diversity, Persistence, and Relation to Clinical and Food Isolates.Applied and environmental microbiology · 2022Article
- Genetic Diversity and Relationships ofMicroorganisms · 2022Article
- Foodomics: Analytical Opportunities and Challenges.Analytical chemistry · 2022Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
As WGS is increasingly used by food industry to characterize pathogen isolates, users are challenged by the variety of analysis approaches available, ranging from methods that require extensive bioinformatics expertise to commercial software packages. This study aimed to assess the impact of analysis pipelines (i.e., different hqSNP pipelines, a cg/wgMLST pipeline) and the reference genome selection on analysis results (i.e., hqSNP and allelic differences as well as tree topologies) and conclusion drawn. For these comparisons, whole genome sequences were obtained for 40
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