Evidence map›Paper›PMID 31142841›Full record

ArticleNature2019

Metabolic control of BRISC-SHMT2 assembly regulates immune signalling.

Miriam Walden, Lei Tian, Rebecca L Ross, Upasana M Sykora, Dominic P Byrne, Emma L Hesketh, Safi K Masandi, Joel Cassel, Rachel George, James R Ault and 8 more

Abstract read
In one paragraph

Article in Nature, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 5 countries.

Miriam WaldenAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.
Lei TianDepartment of Cancer Biology, Basser Center for BRCA, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Rebecca L RossLeeds Institute of Rheumatic and Musculoskeletal Medicine and NIHR Biomedical Research Centre, University of Leeds, Leeds, UK.
Upasana M SykoraAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.
Dominic P ByrneDepartment of Biochemistry, Institute of Integrative Biology, University of Liverpool, Liverpool, UK.
Emma L HeskethAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.
Safi K MasandiAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.
Joel CasselThe Wistar Cancer Center for Molecular Screening, The Wistar Institute, Philadelphia, PA, USA.
Rachel GeorgeAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.
James R AultAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.
Farid El OualidUbiQ Bio BV, Amsterdam, The Netherlands.
Krzysztof PawłowskiWarsaw University of Life Sciences, Warsaw, Poland.
Joseph M SalvinoThe Wistar Cancer Center for Molecular Screening, The Wistar Institute, Philadelphia, PA, USA.
Patrick A EyersDepartment of Biochemistry, Institute of Integrative Biology, University of Liverpool, Liverpool, UK.
Neil A RansonAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.
Francesco Del GaldoLeeds Institute of Rheumatic and Musculoskeletal Medicine and NIHR Biomedical Research Centre, University of Leeds, Leeds, UK.
Roger A GreenbergDepartment of Cancer Biology, Basser Center for BRCA, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. rogergr@pennmedicine.upenn.edu.
Elton ZeqirajAstbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK. e.zeqiraj@leeds.ac.uk.
University of Leeds · GBInstitute of Structural and Molecular Biology · GBThe Wistar Institute · USUniversity of Liverpool · GBUniversity of Pennsylvania · USLund University · SEUniQure (Netherlands) · NL

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
The RAP80-BRCC36 Deubiquitinating Complex in DNA RepairR01CA138835 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Roger A Greenberg · 2010 to 2026
$5.2M
DNA Double Strand Break Chromatin Alterations and Genome IntegrityR01GM101149 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GREENBERG, ROGER A · 2013 to 2025
$4.0M
Department of Health CDF-2014-07-051Medical Research Council MC_PC_16050NCI NIH HHS P30 CA010815NCI NIH HHS R01 CA138835NIGMS NIH HHS R01 GM101149Wellcome Trust 108466Wellcome Trust 108466/Z/15/ZWellcome Trust 200523Wellcome Trust 200523/Z/16/ZWellcome Trust 208385/Z/17/Z
6 · The paper itself

Abstract

Serine hydroxymethyltransferase 2 (SHMT2) regulates one-carbon transfer reactions that are essential for amino acid and nucleotide metabolism, and uses pyridoxal-5'-phosphate (PLP) as a cofactor. Apo SHMT2 exists as a dimer with unknown functions, whereas PLP binding stabilizes the active tetrameric state. SHMT2 also promotes inflammatory cytokine signalling by interacting with the deubiquitylating BRCC36 isopeptidase complex (BRISC), although it is unclear whether this function relates to metabolism. Here we present the cryo-electron microscopy structure of the human BRISC-SHMT2 complex at a resolution of 3.8 Å. BRISC is a U-shaped dimer of four subunits, and SHMT2 sterically blocks the BRCC36 active site and inhibits deubiquitylase activity. Only the inactive SHMT2 dimer-and not the active PLP-bound tetramer-binds and inhibits BRISC. Mutations in BRISC that disrupt SHMT2 binding impair type I interferon signalling in response to inflammatory stimuli. Intracellular levels of PLP regulate the interaction between BRISC and SHMT2, as well as inflammatory cytokine responses. These data reveal a mechanism in which metabolites regulate deubiquitylase activity and inflammatory signalling.

Indexed as

Cryoelectron MicroscopyDeubiquitinating EnzymesGlycine HydroxymethyltransferaseHEK293 CellsHumansInflammationInterferon Type IModels, MolecularMultienzyme ComplexesMutationProtein BindingProtein MultimerizationProtein Structure, QuaternaryPyridoxal PhosphateSignal TransductionBRCC3 protein, humanDeubiquitinating EnzymesGlycine HydroxymethyltransferaseInterferon Type IMultienzyme ComplexesPyridoxal PhosphateSHMT protein, human

Identifiers

PMID31142841
PMCPMC6914362
OpenAlexW2947028185

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.