Evidence map›Paper›PMID 31142587›Full record

ArticleThe Journal of experimental medicine2019

c-MYC regulates mRNA translation efficiency and start-site selection in lymphoma.

Kamini Singh, Jianan Lin, Yi Zhong, Antonija Burčul, Prathibha Mohan, Man Jiang, Liping Sun, Vladimir Yong-Gonzalez, Agnes Viale, Justin R Cross and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
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  7. Review
  8. Review
  9. Article
  10. Article
  11. SRC2 controls CD4Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Proteomics Analysis of R-Ras Deficiency in Oxygen Induced Retinopathy.International journal of molecular sciences · 2023
    Article
  13. Article
  14. Lessons in aging from Myc knockout mouse models.Frontiers in cell and developmental biology · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. A Rapid Translational Immune Response Program in CD8 Memory T Lymphocytes.Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Kamini SinghCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY.
Jianan LinThe Jackson Laboratory for Genomic Medicine, Farmington, CT.ORCID 0000-0003-3894-6902
Yi ZhongComputational Biology Department, Memorial Sloan Kettering Cancer Center, New York, NY.
Antonija BurčulComputational Biology Department, Memorial Sloan Kettering Cancer Center, New York, NY.
Prathibha MohanCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY.
Man JiangCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY.
Liping SunIntegrated Genomics Operation, Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY.
Vladimir Yong-GonzalezDonald B. and Catherine C. Marron Cancer Metabolism Center, Memorial Sloan Kettering Cancer Center, New York, NY.
Agnes VialeIntegrated Genomics Operation, Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY.
Justin R CrossDonald B. and Catherine C. Marron Cancer Metabolism Center, Memorial Sloan Kettering Cancer Center, New York, NY.
Ronald C HendricksonProteomics and Microchemistry, Memorial Sloan- Kettering Cancer Center, New York, NY.
Gunnar RätschComputational Biology Department, Memorial Sloan Kettering Cancer Center, New York, NY raetsch@inf.ethz.ch.
Zhengqing OuyangThe Jackson Laboratory for Genomic Medicine, Farmington, CT zhengqing.ouyang@jax.org.
Hans-Guido WendelCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY wendelh@mskcc.org.ORCID 0000-0002-4608-222X
Memorial Sloan Kettering Cancer Center · USJackson Laboratory · USUniversity of Connecticut · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
Targeting Oncogenic Pathways in Genetically Complex SarcomasP50CA217694 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Marc Ladanyi · 2018 to 2026
$21.5M
Translating Stress Response Targeted Therapy for B-Cell LymphomasP50CA192937 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ZELENETZ, ANDREW D. · 2016 to 2020
$10.9M
RNA STRUCTUROME IN POST-TRANSCRIPTIONAL REGULATIONR35GM124998 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Zhengqing Ouyang · 2017 to 2026
$2.8M
The genomic pathogenesis of Follicular LymphomaR01CA190384 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MALEK, SAMI NIMER, WENDEL, HANS-GUIDO · 2015 to 2019
$2.7M
Towards The Chemotherapy-Free Treatment of Follicular LymphomaR01CA183876 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI WENDEL, HANS-GUIDO · 2014 to 2018
$2.5M
Exploring oncogenic translation programs in cancerR01CA207217 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI WENDEL, HANS-GUIDO · 2016 to 2020
$2.1M
LTQ-ORBITRAP VELOS Tandem Mass SpectrometerS10OD010598 · OD · SLOAN-KETTERING INST CAN RESEARCH · PI HENDRICKSON, RONALD CHARLES · 2012 to 2012
$460k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA034196NCI NIH HHS P50 CA192937NCI NIH HHS P50 CA217694NCI NIH HHS R01 CA183876NCI NIH HHS R01 CA190384NCI NIH HHS R01 CA207217NIGMS NIH HHS R35 GM124998NIH HHS S10 OD010598
6 · The paper itself

Abstract

The oncogenic c-MYC (MYC) transcription factor has broad effects on gene expression and cell behavior. We show that MYC alters the efficiency and quality of mRNA translation into functional proteins. Specifically, MYC drives the translation of most protein components of the electron transport chain in lymphoma cells, and many of these effects are independent from proliferation. Specific interactions of MYC-sensitive RNA-binding proteins (e.g., SRSF1/RBM42) with 5'UTR sequence motifs mediate many of these changes. Moreover, we observe a striking shift in translation initiation site usage. For example, in low-MYC conditions, lymphoma cells initiate translation of the CD19 mRNA from a site in exon 5. This results in the truncation of all extracellular CD19 domains and facilitates escape from CD19-directed CAR-T cell therapy. Together, our findings reveal MYC effects on the translation of key metabolic enzymes and immune receptors in lymphoma cells.

Indexed as

Protein BiosynthesisTranscription Initiation Site5' Untranslated RegionsCell Line, TumorHumansLymphomaOpen Reading FramesProto-Oncogene Proteins c-mycRNA-Binding ProteinsRNA, Messenger5' Untranslated RegionsProto-Oncogene Proteins c-mycRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID31142587
PMCPMC6605752
OpenAlexW2947870610

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.