Evidence map›Paper›PMID 31142541›Full record

ArticleDevelopment (Cambridge, England)2019

Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development.

Guang Li, Lei Tian, William Goodyer, Eric J Kort, Jan W Buikema, Adele Xu, Joseph C Wu, Stefan Jovinge, Sean M Wu

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
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  9. LncRNAs in theInternational journal of molecular sciences · 2024
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  10. Article
  11. Review
  12. DbhNature communications · 2023
    Article
  13. Article
  14. Generation of cardiomyocytes from human-induced pluripotent stem cells resembling atrial cells with ability to respond to adrenoceptor agonists.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Guang LiCardiovascular Institute, Stanford University School of Medicine, Stanford, CA 94305, USA smwu@stanford.edu stefan.Jovinge@vai.org guangli@pitt.edu.ORCID 0000-0002-8546-2364
Lei TianCardiovascular Institute, Stanford University School of Medicine, Stanford, CA 94305, USA.
William GoodyerCardiovascular Institute, Stanford University School of Medicine, Stanford, CA 94305, USA.
Eric J KortDeVos Cardiovascular Research Program of Spectrum Health and Van Andel Research Institute, 100 Michigan Street NE, Grand Rapids, MI 49503, USA.ORCID 0000-0002-9966-7483
Jan W BuikemaDepartment of Cardiology, Utrecht Regenerative Medicine Center, University Medical Center Utrecht, Utrecht University, 3508 GA Utrecht, The Netherlands.
Adele XuDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Joseph C WuCardiovascular Institute, Stanford University School of Medicine, Stanford, CA 94305, USA.
Stefan JovingeCardiovascular Institute, Stanford University School of Medicine, Stanford, CA 94305, USA smwu@stanford.edu stefan.Jovinge@vai.org guangli@pitt.edu.ORCID 0000-0002-8446-0228
Sean M WuCardiovascular Institute, Stanford University School of Medicine, Stanford, CA 94305, USA smwu@stanford.edu stefan.Jovinge@vai.org guangli@pitt.edu.ORCID 0000-0002-0000-3821
Cardiovascular Institute of the South · USVan Andel Institute · USStanford University · USUniversity of Pittsburgh · USUtrecht University · NL

Funding

Human iPSCs for Elucidating Intercellular Crosstalk Signaling in Dilated CardiomyopathyR01HL141371 · NHLBI · STANFORD UNIVERSITY · PI WONG, WING H., WU, JOSEPH C. · 2018 to 2025
$6.2M
Single Cell Sequencing of Human iPSC-CM Subtype Identity and FunctionR01HL145676 · NHLBI · STANFORD UNIVERSITY · PI MARK MERCOLA, Joseph C. Wu · 2019 to 2026
$5.1M
Training in Myocardial Biology at Stanford (TIMBS)T32HL094274 · NHLBI · STANFORD UNIVERSITY · PI Euan A Ashley, Daniel Bernstein · 2010 to 2026
$5.0M
Enabling Technologies for Human-Machine Hybrid TissuesDP1LM012179 · NLM · STANFORD UNIVERSITY · PI WU, SEAN M · 2014 to 2018
$3.8M
Cellular and Molecular Mechanisms of Atrial Cardiomyocyte Lineage Commitment R00HL133472 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LI, GUANG · 2019 to 2021
$750k
Cellular and molecular mechanisms of atrial cardiomyocyte lineage commitment.K99HL133472 · NHLBI · STANFORD UNIVERSITY · PI LI, GUANG · 2017 to 2018
$255k
NHLBI NIH HHS K99 HL133472NHLBI NIH HHS R00 HL133472NHLBI NIH HHS R01 HL141371NHLBI NIH HHS R01 HL145676NHLBI NIH HHS T32 HL094274NLM NIH HHS DP1 LM012179
6 · The paper itself

Abstract

The heart is a complex organ composed of multiple cell and tissue types. Cardiac cells from different regions of the growing embryonic heart exhibit distinct patterns of gene expression, which are thought to contribute to heart development and morphogenesis. Single cell RNA sequencing allows genome-wide analysis of gene expression at the single cell level. Here, we have analyzed cardiac cells derived from early stage developing hearts by single cell RNA-seq and identified cell cycle gene expression as a major determinant of transcriptional variation. Within cell cycle stage-matched CMs from a given heart chamber, we found that CMs in the G2/M phase downregulated sarcomeric and cytoskeletal markers. We also identified cell location-specific signaling molecules that may influence the proliferation of other nearby cell types. Our data highlight how variations in cell cycle activity selectively promote cardiac chamber growth during development, reveal profound chamber-specific cell cycle-linked transcriptional shifts, and open the way to deeper understanding of pathogenesis of congenital heart disease.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalTranscription, GeneticAnimalsCell CycleCluster AnalysisComputational BiologyCytoskeletonGenomicsHeartMiceMorphogenesisMyocardiumMyocytes, CardiacRNASarcomeresRNACell cycleCompact myocardiumEmbryonic heartLigand receptor interactionSingle cell RNA sequencingTrabecular myocardium

Identifiers

PMID31142541
PMCPMC6602356
OpenAlexW2947808148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.