Evidence map›Paper›PMID 31142513›Full record

ArticleCancer research2019

The Immune Contexture Associates with the Genomic Landscape in Lung Adenomatous Premalignancy.

Kostyantyn Krysan, Linh M Tran, Brandon S Grimes, Gregory A Fishbein, Atsuko Seki, Brian K Gardner, Tonya C Walser, Ramin Salehi-Rad, Jane Yanagawa, Jay M Lee and 7 more

Open access · greenAbstract readComment
In one paragraph

Article in Cancer research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. Pooled it
  2. Revisiting tumor immunogenicity through the lens of mutant p53: Implications for cancer immunotherapy.Apoptosis : an international journal on programmed cell death · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Kostyantyn Krysan *Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California. KKrysan@mednet.ucla.edu SDubinett@mednet.ucla.edu.ORCID https://orcid.org/0000-0003-0250-1346
Linh M Tran *Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.ORCID https://orcid.org/0000-0001-8597-643X
Brandon S GrimesDepartment of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.
Gregory A FishbeinDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.ORCID https://orcid.org/0000-0002-3632-5654
Atsuko SekiDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.
Brian K GardnerDepartment of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.
Tonya C WalserDepartment of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.
Ramin Salehi-RadDepartment of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.
Jane YanagawaDepartment of Surgery, David Geffen School of Medicine at UCLA, Los Angeles, California.
Jay M LeeDepartment of Surgery, David Geffen School of Medicine at UCLA, Los Angeles, California.
Sherven SharmaVA Greater Los Angeles Healthcare System, Los Angeles, California.
Denise R AberleDepartment of Radiology, David Geffen School of Medicine at UCLA, Los Angeles, California.
Arum E SpiraDepartment of Medicine and Boston University-BMC Cancer Center, Boston University, Boston, Massachusetts.
David A ElashoffDepartment of Biostatistics and Biomathematics, David Geffen School of Medicine at UCLA, Los Angeles, California.
William D WallaceDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.
Michael C FishbeinDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California.ORCID https://orcid.org/0000-0002-3632-5654
Steven M DubinettDepartment of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, California. KKrysan@mednet.ucla.edu SDubinett@mednet.ucla.edu.
University of California, Los Angeles · USBoston University · USVA Greater Los Angeles Healthcare System · US

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
UCLA Clinical Translational Science InstituteUL1TR001881 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARLEEN F. BROWN, ARASH NAEIM · 2016 to 2026
$118.1M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
UCLA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033176 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2011 to 2011
$15.5M
UCLA Pulmonary and Critical Care Medicine Training ProgramT32HL072752 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JOHN A BELPERIO, TOMAS GANZ · 2003 to 2026
$8.3M
Integrated Molecular, Cellular, and Imaging Characterization of Screen-Detected Lung CancerU01CA196408 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ABERLE, DENISE R., DUBINETT, STEVEN M. · 2015 to 2021
$7.1M
The Lung PCA: A Multi-Dimensional Atlas of Pulmonary PremalignancyU2CCA233238 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI DUBINETT, STEVEN M., SPIRA, AVRUM E · 2018 to 2021
$7.0M
The UCLA - Boston University Lung Cancer Biomarker Development LaboratoryU01CA152751 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M., ELASHOFF, DAVID · 2010 to 2015
$5.0M
The Boston University-UCLA Lung Cancer Biomarker Development LabU01CA214182 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ABERLE, DENISE R., DUBINETT, STEVEN M. · 2016 to 2021
$3.1M
CSRD VA I01 CX000345NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1 TR001881NCI NIH HHS P30 CA016042NCI NIH HHS U01 CA152751NCI NIH HHS U01 CA196408NCI NIH HHS U01 CA214182NCI NIH HHS U2C CA233238NCRR NIH HHS UL1 RR033176NHLBI NIH HHS T32 HL072752
6 · The paper itself

Abstract

Epithelial cells in the field of lung injury can give rise to distinct premalignant lesions that may bear unique genetic aberrations. A subset of these lesions may escape immune surveillance and progress to invasive cancer; however, the mutational landscape that may predict progression has not been determined. Knowledge of premalignant lesion composition and the associated microenvironment is critical for understanding tumorigenesis and the development of effective preventive and interception strategies. To identify somatic mutations and the extent of immune cell infiltration in adenomatous premalignancy and associated lung adenocarcinomas, we sequenced exomes from 41 lung cancer resection specimens, including 89 premalignant atypical adenomatous hyperplasia lesions, 15 adenocarcinomas

Indexed as

AdenocarcinomaAdenomaLung NeoplasmsPrecancerous ConditionsGenomicsHumansTumor Microenvironment

Identifiers

PMID31142513
PMCPMC6774823
OpenAlexW2947447542

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.