Evidence map›Paper›PMID 31142202›Full record

ArticleNucleus (Austin, Tex.)2019

Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells.

Li-Chun Cheng, Sabyasachi Baboo, Cory Lindsay, Liza Brusman, Salvador Martinez-Bartolomé, Olga Tapia, Xi Zhang, John R Yates, Larry Gerace

Open access · goldAbstract read
In one paragraph

Article in Nucleus (Austin, Tex.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
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  9. The role of lipids in genome integrity and pluripotency.Biochemical Society transactions · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Li-Chun Chenga Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.ORCID 0000-0003-2570-535X
Sabyasachi Babooa Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
Cory Lindsaya Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
Liza Brusmana Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
Salvador Martinez-Bartoloméa Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.ORCID 0000-0001-7592-5612
Olga Tapiaa Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
Xi Zhanga Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
John R Yatesa Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
Larry Geracea Department of Molecular Medicine , The Scripps Research Institute , La Jolla , CA , USA.
Scripps Research Institute · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
STRUCTURE AND FUNCTIONS OF THE NUCLEAR ENVELOPER01GM028521 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GERACE, LARRY R. · 1985 to 2020
$7.0M
Mapping the organization of the peripheral nuclear compartmentU01DA040709 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI GERACE, LARRY R. · 2015 to 2019
$2.9M
NIDA NIH HHS U01 DA040709NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM028521
6 · The paper itself

Abstract

The double membrane nuclear envelope (NE), which is contiguous with the ER, contains nuclear pore complexes (NPCs) - the channels for nucleocytoplasmic transport, and the nuclear lamina (NL) - a scaffold for NE and chromatin organization. Since numerous human diseases linked to NE proteins occur in mesenchyme-derived cells, we used proteomics to characterize NE and other subcellular fractions isolated from mesenchymal stem cells and from adipocytes and myocytes. Based on spectral abundance, we calculated enrichment scores for proteins in the NE fractions. We demonstrated by quantitative immunofluorescence microscopy that five little-characterized proteins with high enrichment scores are substantially concentrated at the NE, with Itprip exposed at the outer nuclear membrane, Smpd4 enriched at the NPC, and Mfsd10, Tmx4, and Arl6ip6 likely residing in the inner nuclear membrane. These proteins provide new focal points for studying the functions of the NE. Moreover, our datasets provide a resource for evaluating additional potential NE proteins.

Indexed as

ProteomicsCells, CulturedHEK293 CellsHumansMembrane ProteinsMesenchymal Stem CellsNuclear EnvelopeOrganellesMembrane Proteinsadipocytemesenchymal stem cell (MSC)myocyteNuclear envelopenuclear pore complex (NPC)proteomics

Identifiers

PMID31142202
PMCPMC6550788
OpenAlexW2952891171

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.