Evidence map›Paper›PMID 31140974›Full record

ArticleeLife2019

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages.

Lauren M Saunders, Abhishek K Mishra, Andrew J Aman, Victor M Lewis, Matthew B Toomey, Jonathan S Packer, Xiaojie Qiu, Jose L McFaline-Figueroa, Joseph C Corbo, Cole Trapnell and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 174 citations in OpenAlex.

  1. Beyond the Classics: The Synergy of AI and Genomics Reveals an Expanded Repertoire of Pigmentation Genes.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2026
    Review
  2. Article
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  6. Lysosome-related organelles orchestrate guanine crystal formation in pigment cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Cell type diversification and phenotype convergence underlying white fin-ornamentation of cyprinid fishes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
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  13. Specialized molecular pathways drive the formation of light-scattering assemblies in leucophores.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Mgat4b-mediated selectiveProceedings of the National Academy of Sciences of the United States of America · 2025
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  19. Agouti and BMP signaling drive a naturally occurring fate conversion of melanophores to leucophores in zebrafish.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Lauren M SaundersDepartment of Genome Sciences, University of Washington, Seattle, United States.ORCID 0000-0003-4377-4252
Abhishek K MishraDepartment of Biology, University of Virginia, Charlottesville, United States.
Andrew J AmanDepartment of Biology, University of Virginia, Charlottesville, United States.
Victor M LewisDepartment of Genome Sciences, University of Washington, Seattle, United States.
Matthew B ToomeyDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, United States.ORCID 0000-0001-9184-197X
Jonathan S PackerDepartment of Genome Sciences, University of Washington, Seattle, United States.
Xiaojie QiuDepartment of Genome Sciences, University of Washington, Seattle, United States.
Jose L McFaline-FigueroaDepartment of Genome Sciences, University of Washington, Seattle, United States.
Joseph C CorboDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, United States.ORCID 0000-0002-9323-7140
Cole TrapnellDepartment of Genome Sciences, University of Washington, Seattle, United States.
David M ParichyDepartment of Biology, University of Virginia, Charlottesville, United States.ORCID 0000-0003-2771-6095
University of Washington · USUniversity of Virginia · USWashington University in St. Louis · US

Funding

Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 1985 to 2026
$23.5M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
CARDIOVASCULAR RESEARCH TRAINING PROGRAMT32HL007828 · NHLBI · UNIVERSITY OF WASHINGTON · PI Francis Kim, Farid Moussavi-Harami · 1997 to 2026
$10.2M
Fish facility enhancementR35GM122471 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVID M PARICHY · 2017 to 2026
$6.4M
Pulmonary Macrophage Transplantation for Pulmonary Alveolar ProteinosisR01HL118342 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI TRAPNELL, BRUCE C, TRAPNELL, BRUCE COLSTON · 2014 to 2021
$4.5M
Charting the regulatory topography of the cell differentiation landscape with single-cell RNA-Seq.DP2HD088158 · NICHD · UNIVERSITY OF WASHINGTON · PI TRAPNELL, BRUCE COLSTON · 2015 to 2015
$2.3M
DISSECTING THE CIS-REGULATORY ARCHITECTURE OF THE RETINA BY EPIGENOMIC PROFILINGR01EY025196 · NEI · WASHINGTON UNIVERSITY · PI CORBO, JOSEPH · 2015 to 2019
$2.3M
CONVERTING BIPOLAR CELLS INTO RED-SHIFTED OPTOGENETIC SENSORS FOR RETINAL THERAPYR01EY024958 · NEI · WASHINGTON UNIVERSITY · PI CORBO, JOSEPH, FLANNERY, JOHN GERARD · 2015 to 2019
$2.2M
DECIPHERING THE MECHANISTIC BASIS OF INFRARED VISION FOR OPTOGENETIC APPLICATIONSR01EY026672 · NEI · WASHINGTON UNIVERSITY · PI CORBO, JOSEPH · 2016 to 2019
$1.4M
NEI NIH HHS EY024958NEI NIH HHS EY025196NEI NIH HHS EY026672NEI NIH HHS P30 EY001730NEI NIH HHS R01 EY024958NEI NIH HHS R01 EY025196NEI NIH HHS R01 EY026672NHLBI NIH HHS R01 HL118342NHLBI NIH HHS T32 HL007828NICHD NIH HHS DP2 HD088158NIGMS NIH HHS R35 GM122471NIGMS NIH HHS T32 GM007067NIGMS NIH HHS T32 GM007270
6 · The paper itself

Abstract

Thyroid hormone (TH) regulates diverse developmental events and can drive disparate cellular outcomes. In zebrafish, TH has opposite effects on neural crest derived pigment cells of the adult stripe pattern, limiting melanophore population expansion, yet increasing yellow/orange xanthophore numbers. To learn how TH elicits seemingly opposite responses in cells having a common embryological origin, we analyzed individual transcriptomes from thousands of neural crest-derived cells, reconstructed developmental trajectories, identified pigment cell-lineage specific responses to TH, and assessed roles for TH receptors. We show that TH promotes maturation of both cell types but in distinct ways. In melanophores, TH drives terminal differentiation, limiting final cell numbers. In xanthophores, TH promotes accumulation of orange carotenoids, making the cells visible. TH receptors act primarily to repress these programs when TH is limiting. Our findings show how a single endocrine factor integrates very different cellular activities during the generation of adult form.

Indexed as

AnimalsCell DifferentiationGene Expression ProfilingGene Expression Regulation, DevelopmentalNeural CrestPigments, BiologicalThyroid HormonesZebrafishPigments, BiologicalThyroid Hormonesdevelopmental biologygeneticsgenomicsmelanophoreneural crestpigmentationpost-embryonic developmentthyroid hormonexanthophorezebrafish

Identifiers

PMID31140974
PMCPMC6588384
OpenAlexW2911328426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.