Evidence map›Paper›PMID 31139759›Full record

ArticlePathogens & immunity2019

CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.

Joshua J Vásquez, Brandon L Aguilar-Rodriguez, Leonardo Rodriguez, Louise E Hogan, Ma Somsouk, Joseph M McCune, Steven G Deeks, Zoltan G Laszik, Peter W Hunt, Timothy J Henrich

Open access · diamondAbstract read
In one paragraph

Article in Pathogens & immunity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. CD32iScience · 2021
    Article
  7. CD32Frontiers in immunology · 2021
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Joshua J VásquezDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
Brandon L Aguilar-RodriguezDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
Leonardo RodriguezDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
Louise E HoganDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
Ma SomsoukDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
Joseph M McCuneDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
Steven G DeeksDepartment of Medicine, Department of Medicine, Division of HIV, Infectious Diseases, and Global Medicine, University of California, San Francisco.
Zoltan G LaszikDepartment of Pathology, University of California, San Francisco.
Peter W HuntDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
Timothy J HenrichDepartment of Medicine, Division of Experimental Medicine, University of California, San Francisco.
University of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Timing of ART and homeostasis of the persistent HIV reservoir in the adultR01AI116368 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUNT, PETER W · 2015 to 2019
$3.7M
The impact of the HIV reservoir on pulmonary myeloid cells: virology, phenotype, and functionK01HL140804 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VASQUEZ, JOSHUA · 2019 to 2023
$956k
Persistent Functional Immune Defects in Treated HIV InfectionK24AI145806 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUNT, PETER W · 2020 to 2024
$921k
NHLBI NIH HHS K01 HL140804NIAID NIH HHS K24 AI145806NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI116368NIMHD NIH HHS L32 MD010903
6 · The paper itself

Abstract

backgroundIdentifying biomarkers for cells harboring replication-competent HIV is a major research priority. Recently, there have been mixed reports addressing the possibility that CD32-expressing T cells are enriched for HIV. There is growing evidence that CD32 expression increases with cellular activation that may be related to, but not necessarily specific for, infection with HIV. However, the relationship of CD32 expression to HIV-infection in subtypes of tissue-resident leukocytes is unclear.

methodsFirst, we used duplex chromogenic in situ hybridization to identify cells actively transcribing RNA for both CD32 and HIV on human gut tissues. Then we performed multiplexed immunofluorescence and in situ hybridization (mIFISH) on sections from the same tissues to determine the phenotype of individual cells co-expressing HIV-RNA and CD32-RNA.

resultsHIV-RNA+ cells were more abundant in tissues from viremic individuals than in those receiving suppressive anti-retroviral therapy (ART). However, staining by both methods indicated that a higher proportion of HIV-RNA+ cells co-expressed CD32-RNA in ART-suppressed individuals than in those with viremia. The majority of HIV-RNA+ cells were CD3+.

conclusionsOur data suggest that the transcription of CD32-RNA is correlated with HIV transcriptional activity in CD3+ cells found within human gut tissue. Whether or not up-regulation of CD32-RNA is a direct result of HIV transcription or more global T-cell activation remains unclear.

Indexed as

CD32gut tissueHIVHIV reservoirsHIV-RNAin situ hybridization

Identifiers

PMID31139759
PMCPMC6508427
OpenAlexW2943300667

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.