Evidence map›Paper›PMID 31139721›Full record

ArticleACS central science2019

Broad-Spectrum Proteome Editing with an Engineered Bacterial Ubiquitin Ligase Mimic.

Morgan B Ludwicki, Jiahe Li, Erin A Stephens, Richard W Roberts, Shohei Koide, Paula T Hammond, Matthew P DeLisa

Abstract read
In one paragraph

Article in ACS central science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Reductive Methylation: An Alternative to Lysine → Arginine Mutagenesis.Journal of peptide science : an official publication of the European Peptide Society · 2026
    Article
  3. Emerging biologic modalities for targeted protein degradation.The Journal of biological chemistry · 2026
    Review
  4. Article
  5. Nanobodies targeting hnRNPA2/B1 and tau.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Morgan B LudwickiRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, 120 Olin Hall, Ithaca, New York 14853, United States.
Jiahe LiDepartment of Chemical Engineering and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.
Erin A StephensBiochemistry, Molecular and Cell Biology, Cornell University, Ithaca, New York 14853, United States.
Richard W RobertsDepartment of Chemistry, University of Southern California, Los Angeles, California 90089, United States.
Shohei KoidePerlmutter Cancer Center, New York University Langone Medical Center, New York, New York 10016, United States.
Paula T HammondDepartment of Chemical Engineering and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.
Matthew P DeLisaRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, 120 Olin Hall, Ithaca, New York 14853, United States.

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Paula T Hammond · 1985 to 2026
$93.9M
Probing RAS-mediated Signaling with Monobody InhibitorsR01CA212608 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SHOHEI KOIDE, John P O'Bryan · 2017 to 2026
$5.8M
Molecular mechanisms of SHP2 signaling dissected with designer binding proteinsR01CA194864 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KOIDE, SHOHEI · 2016 to 2020
$1.8M
SUPR Peptides to Inhibit Undruggable Cancer Target (PQ18)R01CA170820 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROBERTS, RICHARD W, TAKAHASHI, TERRY TORAO · 2012 to 2015
$1.8M
Genetically encoded probes for visualizing neuronal structure and functionR01GM083898 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ARNOLD, DONALD B, ROBERTS, RICHARD W · 2008 to 2011
$1.2M
Broad wavelength range Zeiss 780 NLO/confocal system for the Cornell Imaging CoreS10OD018516 · OD · CORNELL UNIVERSITY · PI ZIPFEL, WARREN R · 2014 to 2014
$834k
A new technology platform for studying protein functionR21CA132223 · NCI · CORNELL UNIVERSITY · PI DELISA, MATTHEW P · 2008 to 2009
$399k
NCI NIH HHS P30 CA014051NCI NIH HHS R01 CA170820NCI NIH HHS R01 CA194864NCI NIH HHS R01 CA212608NCI NIH HHS R21 CA132223NIGMS NIH HHS R01 GM083898NIH HHS S10 OD018516
6 · The paper itself

Abstract

Manipulation of the ubiquitin-proteasome pathway to achieve targeted silencing of cellular proteins has emerged as a reliable and customizable strategy for remodeling the mammalian proteome. One such approach involves engineering bifunctional proteins called ubiquibodies that are comprised of a synthetic binding protein fused to an E3 ubiquitin ligase, thus enabling post-translational ubiquitination and degradation of a target protein independent of its function. Here, we have designed a panel of new ubiquibodies based on E3 ubiquitin ligase mimics from bacterial pathogens that are capable of effectively interfacing with the mammalian proteasomal degradation machinery for selective removal of proteins of interest. One of these, the

Identifiers

PMID31139721
PMCPMC6535771

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.