Evidence map›Paper›PMID 31139267›Full record

ArticleMobile DNA2019

Targeted gene knockin in zebrafish using the 28S rDNA-specific non-LTR-retrotransposon R2Ol.

Azusa Kuroki-Kami, Narisu Nichuguti, Haruka Yatabe, Sayaka Mizuno, Shoji Kawamura, Haruhiko Fujiwara

Open access · goldAbstract read
In one paragraph

Article in Mobile DNA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

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  12. Efficient Nuclease-Directed Integration of Lentivirus Vectors into the Human Ribosomal DNA Locus.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Azusa Kuroki-Kami *Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Bioscience Bldg., Kashiwanoha 5-1-5, Kashiwa, Chiba, 277-8562 Japan.
Narisu Nichuguti *Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Bioscience Bldg., Kashiwanoha 5-1-5, Kashiwa, Chiba, 277-8562 Japan.
Haruka YatabeDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Bioscience Bldg., Kashiwanoha 5-1-5, Kashiwa, Chiba, 277-8562 Japan.
Sayaka MizunoDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Bioscience Bldg., Kashiwanoha 5-1-5, Kashiwa, Chiba, 277-8562 Japan.
Shoji KawamuraDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Bioscience Bldg., Kashiwanoha 5-1-5, Kashiwa, Chiba, 277-8562 Japan.
Haruhiko FujiwaraDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Bioscience Bldg., Kashiwanoha 5-1-5, Kashiwa, Chiba, 277-8562 Japan.
The University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlthough most of long interspersed elements (LINEs), one class of non-LTR-retrotransposons, are integrated into the host genome randomely, some elements are retrotransposed into the specific sequences of the genomic regions, such as rRNA gene (rDNA) clusters, telomeric repeats and other repetitive sequenes. Most of the sequence-specific LINEs have been reported mainly among invertebrate species and shown to retrotranspose into the specific sequences in vivo and in vitro systems. Recenlty, 28S rDNA-specific LINE R2 elements are shown to be distributed among widespread vertebrate species, but the sequence-specific retrotransposition of R2 has never been demonstrated in vertebrates.

resultsHere we cloned a full length unit of R2 from medaka fish

conclusionsSequence-specific LINE retrotransposes into the precise sequence using target primed reverse transcription (TPRT), possibly providing an alternative and effective targeted gene knockin method in vertebrates.

Indexed as

28S rDNA specific element R2Long interspersed element (LINE)Non-LTR retrotransposonSequence-specific retrotranspositionTargeted gene knockinTransgenic zebrafish

Identifiers

PMID31139267
PMCPMC6530143
OpenAlexW2947530026

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.