Evidence map›Paper›PMID 31138930›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

SMAD6 is frequently mutated in nonsyndromic radioulnar synostosis.

Yongjia Yang, Yu Zheng, Wangming Li, Liping Li, Ming Tu, Liu Zhao, Haibo Mei, Guanghui Zhu, Yimin Zhu

Erratum issuedOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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  4. HomozygousJournal of medical genetics · 2024
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  11. MutantFrontiers in genetics · 2022
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  13. Further phenotypic features and two novelMolecular medicine reports · 2021
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yongjia YangThe Laboratory of Genetics and Metabolism, Hunan Children's Research Institute (HCRI), Hunan Children's Hospital, University of South China, Changsha, China. yongjia727@aliyun.com.ORCID http://orcid.org/0000-0002-8673-1589
Yu ZhengThe Laboratory of Genetics and Metabolism, Hunan Children's Research Institute (HCRI), Hunan Children's Hospital, University of South China, Changsha, China.ORCID http://orcid.org/0000-0002-2511-961X
Wangming LiDepartment of Radiology, Hunan Children's Hospital, University of South China, Changsha, China.ORCID http://orcid.org/0000-0003-0753-8180
Liping LiThe Laboratory of Genetics and Metabolism, Hunan Children's Research Institute (HCRI), Hunan Children's Hospital, University of South China, Changsha, China.ORCID http://orcid.org/0000-0002-1515-960X
Ming TuThe Laboratory of Genetics and Metabolism, Hunan Children's Research Institute (HCRI), Hunan Children's Hospital, University of South China, Changsha, China.ORCID http://orcid.org/0000-0001-5516-8116
Liu ZhaoThe Laboratory of Genetics and Metabolism, Hunan Children's Research Institute (HCRI), Hunan Children's Hospital, University of South China, Changsha, China.ORCID http://orcid.org/0000-0001-6068-8511
Haibo MeiDepartment of Orthopedics, Hunan Children's Hospital, University of South China, Changsha, China.ORCID http://orcid.org/0000-0002-9434-1716
Guanghui ZhuDepartment of Orthopedics, Hunan Children's Hospital, University of South China, Changsha, China.ORCID http://orcid.org/0000-0003-1418-2768
Yimin ZhuThe Laboratory of Genetics and Metabolism, Hunan Children's Research Institute (HCRI), Hunan Children's Hospital, University of South China, Changsha, China. xiangeryiym@aliyun.com.ORCID http://orcid.org/0000-0001-6665-3539
Hunan Children's Hospital · CNUniversity of South China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeRadioulnar synostosis (RUS) can be syndromic or nonsyndromic. The genetic basis for several RUS syndromes have been reported. However, the genetic cause of nonsyndromic RUS (nsRUS) remains unknown.

methodsWe performed Giemsa (GTG) banding, Sanger sequencing, and exome sequencing on patients (n = 140) and families (n = 11) who suffered from RUS.

resultsGTG banding identified 10% RUS sporadic cases affected by sex chromosome aneuploidy. Sanger sequencing on candidate genes revealed noggin (NOG) rarely mutated in nsRUS. Exome sequencing identified 16 loss-of-function (LOF) and 6 missense variants (minor allele frequency [MAF] < 0.0001) in 22/117 nsRUS sporadic patients. Genetic association analysis found a significant association between SMAD6-LOF variants and nsRUS risk (odds ratio [OR] = 430, 95% confidence interval [CI]: 238-780, P < 0.000001). SMAD6 mutated in nsRUS was further confirmed by direct Sanger sequencing of SMAD6-coding regions on other unrelated cohorts of nsRUS cases or families. In summary, we detected 27 SMAD6 rare variants in nsRUS, most of which were LOF variants, 4 were de novo, and 3 were transmitted in families with autosomal dominant inheritance.

conclusionAs an intracellular bone morphogenetic protein (BMP) antagonist gene, SMAD6 is frequently mutated in nsRUS. NOG, which encodes an extracellular BMP antagonist, is rarely mutated in nsRUS. This work is the first genetic study on nsRUS.

Indexed as

AdolescentAdultAllelesChildChild, PreschoolExome SequencingFamilyFemaleGene FrequencyHumansInfantInfant, NewbornMaleMutation, MissensePedigreePenetranceSmad6 ProteinSMAD6 protein, humanexome sequencingGTG bandingNOGnsRUSSMAD6

Identifiers

PMID31138930
OpenAlexW2947620148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.