Evidence map›Paper›PMID 31138864›Full record

ArticleScientific reports2019

Role of deleterious single nucleotide variants in the coding regions of TNFAIP3 for Japanese autoimmune hepatitis with cirrhosis.

Takashi Higuchi, Shomi Oka, Hiroshi Furukawa, Minoru Nakamura, Atsumasa Komori, Seigo Abiru, Satoru Hashimoto, Masaaki Shimada, Kaname Yoshizawa, Hiroshi Kouno and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. TheFrontiers in immunology · 2023
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Pathogenesis of autoimmune hepatitis.World journal of hepatology · 2021
    Review
  7. Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 1 country.

Takashi HiguchiMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, 1-1-1 Tennodai, 305-8575, Tsukuba, Japan.
Shomi OkaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, 1-1-1 Tennodai, 305-8575, Tsukuba, Japan.
Hiroshi FurukawaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, 1-1-1 Tennodai, 305-8575, Tsukuba, Japan. furukawa-tky@umin.org.ORCID http://orcid.org/0000-0002-4022-0767
Minoru NakamuraClinical Research Center, National Hospital Organization Nagasaki Medical Center, 2-1001-1 Kubara, 856-8562, Omura, Japan.
Atsumasa KomoriClinical Research Center, National Hospital Organization Nagasaki Medical Center, 2-1001-1 Kubara, 856-8562, Omura, Japan.
Seigo AbiruClinical Research Center, National Hospital Organization Nagasaki Medical Center, 2-1001-1 Kubara, 856-8562, Omura, Japan.
Satoru HashimotoClinical Research Center, National Hospital Organization Nagasaki Medical Center, 2-1001-1 Kubara, 856-8562, Omura, Japan.
Masaaki ShimadaNational Hospital Organization, Nagoya Medical Center, 4-1-1 Sannomaru, Naka-ku, 460-0001, Nagoya, Japan.
Kaname YoshizawaDepartment of Gastroenterology, National Hospital Organization, Shinshu Ueda Medical Center, 1-27-21 Midorigaoka, 386-8610, Ueda, Japan.
Hiroshi KounoNational Hospital Organization, Kure Medical Center, 3-1 Aoyama-cho, 737-0023, Kure, Japan.
Atsushi NaganumaNational Hospital Organization, Takasaki General Medical Center, 36 Takamatsu-cho, 370-0829, Takasaki, Japan.ORCID http://orcid.org/0000-0003-0663-0102
Keisuke ArioNational Hospital Organization, Ureshino Medical Center, 2436 Shimojuku, 843-0393, Ureshino, Japan.
Toshihiko KaneyoshiNational Hospital Organization, Fukuyama Medical Center, 4-14-17 Okinogami-cho, 720-8520, Fukuyama, Japan.
Haruhiro YamashitaNational Hospital Organization, Okayama Medical Center, 1711-1 Tamasu, Kita-ku, 701-1192, Okayama, Japan.
Hironao TakahashiNational Hospital Organization, Higashinagoya National Hospital, 5-101 Umemorizaka, Meito-ku, 465-8620, Nagoya, Japan.
Fujio MakitaNational Hospital Organization, Shibukawa Medical Center, 383 Shiroi, 377-0280, Shibukawa, Japan.
Hiroshi YatsuhashiClinical Research Center, National Hospital Organization Nagasaki Medical Center, 2-1001-1 Kubara, 856-8562, Omura, Japan.
Hiromasa OhiraDepartment of Gastroenterology, Fukushima Medical University School of Medicine, 1 Hikarigaoka, 960-1295, Fukushima, Japan.
Kiyoshi MigitaClinical Research Center, National Hospital Organization Nagasaki Medical Center, 2-1001-1 Kubara, 856-8562, Omura, Japan.
National Hospital Organization · JPNagasaki Medical Center · JPUniversity of Tsukuba · JPFukushima Medical University · JPFukuyama Cardiovascular Hospital · JPHigashi Nagoya National Hospital · JPNational Hospital Organization Takasaki Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autoimmune hepatitis (AIH) is an autoimmune liver disease and cirrhosis is sometimes complicated with AIH at diagnosis, influencing its prognosis. TNFAIP3 gene encodes A20, an inhibitor of nuclear factor-κB pathway, and is a susceptibility gene for autoimmune diseases. We investigated deleterious variants in the coding regions of TNFAIP3 gene of Japanese AIH patients or those with cirrhosis. The deleterious variants in the coding regions of TNFAIP3 gene were analyzed by the cycle sequencing method and the frequencies of deleterious TNFAIP3 alleles of AIH or AIH with cirrhosis were compared with those of Japanese controls. The deleterious alleles in TNFAIP3 were not associated with AIH. A significant association was shown for the deleterious alleles in TNFAIP3 (P = 0.0180, odds ratio (OR) 4.28, 95% confidence interval (CI) 1.53-11.95) with AIH with cirrhosis at presentation. The serum IgM levels in AIH patients with deleterious alleles in TNFAIP3 were tended to be lower than those without (P = 0.0152, Q = 0.1216). The frequency of deleterious alleles in TNFAIP3 was higher in the AIH subset without the DRB1 risk alleles than that with (P = 0.0052, OR 5.10, 95%CI 1.55-16.74). The deleterious alleles in TNFAIP3were associated with AIH with cirrhosis.

Indexed as

Polymorphism, Single NucleotideAdultAgedFemaleGene FrequencyGenetic Predisposition to DiseaseHepatitis, AutoimmuneHumansJapanLiver CirrhosisMaleMiddle AgedTumor Necrosis Factor alpha-Induced Protein 3TNFAIP3 protein, humanTumor Necrosis Factor alpha-Induced Protein 3

Identifiers

PMID31138864
PMCPMC6538649
OpenAlexW2947530181

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.